Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4762g00001 ATGCAAACTCTTCTTTCTCTGTCACACTCTCCTTCAACTCCACACTTTCCAAACTTCACACCAAGGCCAAAGTACCTTCCTCAACTCCACTCCTTCAATACCTTCTCCTTGCCCCCATCTTCTCCTTTGCACCTCACTGACACAAAGTCTCCACCTTTCTTCATTTCTTCTCCCAAGCTTGCATCTTTCAGGCTCCTTGCTGCTTCTATCTCTGATGCCAGAAGTGATGAACCAGCCAAAGCTAGTGAGTTGGTTAAGACCCTGCAGCTAGGAGCCATGCTTGCCCTTTGGTACCTCTTGAACATCTACTTCAACATCTACAACAAGCAGGTTCTGAAAGTCTATCCATTTCCAGCAACAGTTACAGCATTTCAATTTGGCTTTGTGTCACTGGTGATTAATTTAATCTGGACTTTCAATCTCCACCCCAGACCAAGCATCAGAGGTTCACAGCTTGCAACACTCCTTCCACTGGCTCTGGCTCACACATTAGGGAATGTCTTGACCAACATTAGTCTTTGCAAGGTTGCTGTATCTTTCACTCACACAATCAAAGCTATGGAGCCTTTCTTTACTGTTCTTCTTTCTGCTCTTTTCTTGGGTCAGATGCCTACTTTCTGGGTGTTTTCTTCCCTTATACCAATAGTTGGAGGAGTGGCGTTGGCATCAATGACTGAAGTCTCTTTCAATTGGATTGGCTTCATCACTGCTATGGCAGCTAACGTTACAAATCAATCAAGGAACGTTTTGAGCAAAAAAATGATGACTAGTGAAGAGGAAAGTTTGGACATTATCAATCTCTATGGAGTTTTAACAATGATTTCCTTCATGTTTTTGGTTCCATATGCCTTACTTGTGGAGGGTGTCAAGTTTTCTCCTTCATACCTGCAATATGCAGCAAGCCAAGGGCTGAATGTTAGAGAGTTATGTGTCAGAGCAATTTTTTCAGCATTCTGCTTCCATGCATACCAACAGGTTTCATATATGATATTGGAGATGGTGTCACCTGTGACACACTCAGTTGCAAACAGTGTGAAGCGTGTGGTTATCATTGTTTCTTCAGTCATCTTCTTCCAAACTCCTGTCTCTCCTGTTAATGCAATTGGAACTGCTATTGCTCTTGTTGGAGTTTTCTTGTACTCAAGGGCAAAGAGGATTAAGCCTGTGCAAAAGACAAACTGA 1182 0.4281 MQTLLSLSHSPSTPHFPNFTPRPKYLPQLHSFNTFSLPPSSPLHLTDTKSPPFFISSPKLASFRLLAASISDARSDEPAKASELVKTLQLGAMLALWYLLNIYFNIYNKQVLKVYPFPATVTAFQFGFVSLVINLIWTFNLHPRPSIRGSQLATLLPLALAHTLGNVLTNISLCKVAVSFTHTIKAMEPFFTVLLSALFLGQMPTFWVFSSLIPIVGGVALASMTEVSFNWIGFITAMAANVTNQSRNVLSKKMMTSEEESLDIINLYGVLTMISFMFLVPYALLVEGVKFSPSYLQYAASQGLNVRELCVRAIFSAFCFHAYQQVSYMILEMVSPVTHSVANSVKRVVIIVSSVIFFQTPVSPVNAIGTAIALVGVFLYSRAKRIKPVQKTN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4762g00001 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 129 225 - -
Vium4762g00001 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 306 385 - -
Vium4762g00001 393 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 88 390 IPR004696 GO:0016020|GO:0022857|GO:0055085
Vium4762g00001 393 PANTHER SOLUTE CARRIER FAMILY 35 90 385 - -
Vium4762g00001 393 Pfam Triose-phosphate Transporter family 88 381 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4762g00001 Vium-Chr4762 1127 4909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4762g00001 6 392 Antiporters AT5G33320 55.155 2.38e-137 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4762g00001 K15283 - gmx:100819280 578.17