Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4761g00005 ATGCTAGTCTTCCTGTCATCACAAACAATGGCTGATGGTCAAGAATCAGACAAGAACATTGAGATATGGAAGATCAAGAAATTGATCAAGGCATTGGAAGCTGCAAGAGGTAACGGTACCAGCATGATTTCCCTGATCATGCCTCCACGTGATCAAATATCCCGGGTCACTAAGATGTTGGGAGATGAATTTGGAACTGCTTCAAACATCAAAAGTAGGGTGAACCGACAGTCAGTGCTGGGAGCCATTACCTCTGCTCAGCAGAGGTTGAAACTATATAACAAGGTCCCTCCAAATGGGTTGGTTCTTTACACAGGAACCATCGTCACTGAAGATGGCAAGGAAAAGAAGGTGACAATTGATTTTGAACCTTTCAAGCCTATCAATGCATCATTGTACCTCTGTGACAACAAGTTTCACACAGAAGCTCTAAATGAACTTTTAGAATCTGATGACAAGTTCGGTTTCATTGTTATGGATGGAAATGGTACCCTTTTTGGGACCTTAAGTGGAAACACGCGTGAGGTGCTTCACAAATTTACTGTTGATCTTCCAAAGAAGCACGGTAGAGGAGGTCAATCCGCTTTGCGTTTTGCTCGTCTTAGGATGGAAAAACGCCACAACTATGTAAGAAAAACTGCAGAACTTGCTACTCAGTTTTTCATCAATCCTGCAACCAGTCAACCTAATGTTTCTGGACTTATACTGGCTGGTTCTGCTGATTTCAAGACTGAGCTGAGTCAGTCCGACATGTTTGACCCTCGGTTGCAAGCAAAAATATTGAATGTGGTGGATGTTTCTTATGGTGGGGAAAATGGATTCAATCAAGCTATTGAGTTATCTGCCGAAATTTTGTCAAATGTGAAGTTCATTCAAGAGAAACGCTTGATAGGGAAATATTTTGAGGAGATCAGTCAGGACACTGGGAGATATGTCTTTGGGGTTGATGACACTCTGAAGGCACTGGAGATGGGTGCTGTGGAAACACTCATTGTGTGGGAAAATTTGGATATTAATAGGTATGTGCTGAAAAATAGTGTCACTGGTGAGATTGTCATAAAGCACTTGGGCAAGGACCAAGAGACTAATCAAAGCAACTTCCGTGATGCAGCAACCTCTGCAGAGTTGGAAGTTCAGGAGAAGATGCCCTTGCTTGAGTGGTTTGCCAATGAGTACAAACGATTTGGATGCTCCCTGGAATTTGTTACCAACAAATCTCAGGAAGGGTCACAGTTCTGCAGAGGGTTTGGTGGCATTGGTGGAATTCTTCGGTACCAGCTTGACATAAGATCATTTGATGAGTTATCTGACGAGGGAGAAGTGTCTGATTCTGATTACTGA 1341 0.428 MLVFLSSQTMADGQESDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGRYVFGVDDTLKALEMGAVETLIVWENLDINRYVLKNSVTGEIVIKHLGKDQETNQSNFRDAATSAELEVQEKMPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDEGEVSDSDY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4761g00005 446 SMART eRF1_1_2 13 149 IPR005140 -
Vium4761g00005 446 Pfam eRF1 domain 2 153 286 IPR005141 -
Vium4761g00005 446 Gene3D eRF1 domain 2 145 286 IPR042226 -
Vium4761g00005 446 Pfam eRF1 domain 3 290 427 IPR005142 -
Vium4761g00005 446 SUPERFAMILY L30e-like 287 429 IPR029064 -
Vium4761g00005 446 FunFam Eukaryotic peptide chain release factor subunit 1 11 144 - -
Vium4761g00005 446 Pfam eRF1 domain 1 27 147 IPR005140 -
Vium4761g00005 446 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 14 437 IPR004403 GO:0003747|GO:0006415
Vium4761g00005 446 SUPERFAMILY Translational machinery components 151 285 - -
Vium4761g00005 446 FunFam Peptide chain release factor subunit 1 288 446 - -
Vium4761g00005 446 Gene3D - 288 445 IPR029064 -
Vium4761g00005 446 NCBIfam peptide chain release factor aRF-1 21 426 IPR004403 GO:0003747|GO:0006415
Vium4761g00005 446 Gene3D eRF1 domain 1 6 144 IPR024049 -
Vium4761g00005 446 FunFam Eukaryotic peptide chain release factor subunit 1 145 286 - -
Vium4761g00005 446 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 15 149 IPR024049 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4761g00005 Vium-Chr4761 171777 174594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4761g00005 10 445 Eukaryotic Initiation Factors Gene Family AT3G26618 93.135 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4761g00005 K03265 - gmx:100786788 822.387