Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium475g00029 ATGCCAGCAACCACCCACCCTATTTATCCACAGAATTTCTACCACCCCACTTCACACATGCCAGAGATCCACTGCTATCACTTTCTTTCTTTCGTGTTCTTCTTTATCAGTAGAAAAATGATACCTCACATACCCTGCATTCTCTCTGCGGTTCATGTTATACTCCTTTTTTCATCAACCCAATTCAGCATCACCGCAGAAGCAACGAGAGCCCTGGAACAAACCCAACTCCATTTCCAGGTAGCAAACTCCACATGCGAGGGAACACTCTACCCGGACCTCTGCGTCTCAACCCTTACCTCTTTCCCAGATCTCACCTCAAAAACTGTACCACAAATGATATGTTCTGTCGTGAACCACACCATATACGAGGTCACATTGTCCTCCTCCAACTGCAGCGGTCTCCGAAAGAAGCTCCCGAGTCTCAACAAACTCGAACAGCGAGCTCTCGACGACTGCCTCGACCTCTTCGACGAAACCGTGGAGGAGCTCAAAACCACCGTGGCGGATCTCTCCCAAAGCACAATAGGGTCGAAGCGTTACCACGACTCGCAGACTCTCTTAAGCGGAGCCATGACCAACCTATACACGTGTCTGGATGGCTTTGCGTACAGCAAAGGGCAAGTGAGGGAGAAGATTGAAGAGGGGCTGTTGAAGATTTCGCATCTCGTAAGCAACTCGTTGGCCATGCTGAAGAAAGTGCCCGAAAAGAAGAAACAGTCGAAGAACGAGATTTTTCCCGAATATGGAAAGATGAAAGACGGGTTCCCGTCGTGGGTTACCCCTAAAGACCGGAAGTTGCTTCAAGCTCCGGTGAATGAAACGAAGTTCGACCTTGTTGTGGCCCAAGATGGCAGTGGCAACTTCACCACTATAGGTGAAGCAGTGGCTGCAGCTCCAAACTCCAGTGCGACCAGATTTGTGATACACATAAAAGCTGGGGCATACTTCGAGAACGTGGAGGTAATAAGGAGGAAGACCAATCTGATGTGGGTCGGAGATGGAATTGGAAAGACTGTTGTGAAGGCAAGCAGGAACGTCGTTGATGGCTGGACTACTTTCCAATCTGCCACTGTCGCTGTGGTTGGAGACGGATTCATAGCAAAGGGTATAACCTTTGAGAACTCAGCTGGGCCCAGCAAACACCAAGCTGTGGCTCTAAGAAGCGGGGCTGATTTCTCAGCCTTCTACCAGTGCAGCTTTGTTGCCTACCAAGACACGCTCTATGTCCACTCTCTGCGTCAATTCTACCGCGAATGCGACGTTTATGGAACCGTGGACTTCATCTTTGGTAATGCAGCAGCGGTGCTCCAGAACTGCAACTTGTACGCAAGAAAGCCTAATCCAAACCAGAGGAACCTGTTCACCGCACAAGGCAGAGAAGACCCTAACCAAAACACCGGCATTTCCATCATAAACTGCAAGGTTGCAGCAGCTGCTGATTTGATCCCTGTGAAATCTGAGTTCAGGAATTACCTGGGTCGTCCCTGGAAGATGTATTCGAGGACTGTTTTTCTGAATTCATTGATGGAGGATCTGATAGACCCTGCAGGGTGGTTGGAATGGAATGGGACGTTTGCATTGGATACTTTGTATTATGGAGAGTACAACAATAGAGGTCCTGGTGCAAATACAAGTGGCAGAGTTACGTGGCCTGGTTATAGAGTCATCACCAACTCCACTGAGGCAAGCCAGTTCACAGTTGCAAATTTCATTCAAGGCAATGAATGGCTGAACTCTTATGGCATTCCATTCTTCTCTGGCTTGACTTGA 1773 0.4873 MPATTHPIYPQNFYHPTSHMPEIHCYHFLSFVFFFISRKMIPHIPCILSAVHVILLFSSTQFSITAEATRALEQTQLHFQVANSTCEGTLYPDLCVSTLTSFPDLTSKTVPQMICSVVNHTIYEVTLSSSNCSGLRKKLPSLNKLEQRALDDCLDLFDETVEELKTTVADLSQSTIGSKRYHDSQTLLSGAMTNLYTCLDGFAYSKGQVREKIEEGLLKISHLVSNSLAMLKKVPEKKKQSKNEIFPEYGKMKDGFPSWVTPKDRKLLQAPVNETKFDLVVAQDGSGNFTTIGEAVAAAPNSSATRFVIHIKAGAYFENVEVIRRKTNLMWVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGDGFIAKGITFENSAGPSKHQAVALRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAAVLQNCNLYARKPNPNQRNLFTAQGREDPNQNTGISIINCKVAAAADLIPVKSEFRNYLGRPWKMYSRTVFLNSLMEDLIDPAGWLEWNGTFALDTLYYGEYNNRGPGANTSGRVTWPGYRVITNSTEASQFTVANFIQGNEWLNSYGIPFFSGLT 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium475g00029 590 SUPERFAMILY Pectin lyase-like 276 588 IPR011050 -
Vium475g00029 590 Gene3D - 272 589 IPR012334 -
Vium475g00029 590 Pfam Pectinesterase 278 575 IPR000070 GO:0030599|GO:0042545
Vium475g00029 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 235 IPR035513 -
Vium475g00029 590 Pfam Plant invertase/pectin methylesterase inhibitor 83 230 IPR006501 GO:0004857
Vium475g00029 590 FunFam Pectinesterase 272 589 - -
Vium475g00029 590 CDD PMEI-like_3 84 235 - -
Vium475g00029 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 83 234 IPR035513 -
Vium475g00029 590 PANTHER PECTINESTERASE 56 579 - -
Vium475g00029 590 SMART PMEI_2 77 230 IPR006501 GO:0004857
Vium475g00029 590 NCBIfam pectinesterase inhibitor domain 51 233 IPR006501 GO:0004857
Vium475g00029 590 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium475g00029 Vium-Chr475 237491 240842 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium475g00029 106 585 Carbohydrate Esterase AT4G02320 56.162 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium475g00029 K01051 - gmx:100813592 965.296