Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium475g00017 ATGTCAAACGATGCCGTTTGCTTCTATTCGGTGCTTGGGATTGGCAAACATTCGACCGATGGTGAAATTCGATGCGCTTATCGTAAGATGGCTATGAAGTGGCATCCTGATAGATGTAGCAAGGACCCAAAGTTTGCACTGGAGGCAAAAAAACAGTTTCAGCTCGTTCAAGAGGCTTATTCAGTTTTGTCCAACACAGGGAAGAGAAGGATATATGATGCTGGTTTGTTTGGTCTAATTGGAGAGGACGATGATGAGGGGTTTGTTGATTTCATGCAAGAAATGATTTTGATGATGCAGAATGTAAGACCCAAGGATGAGAAAGGAACAATGGAGGATCTACAAGGACTGTTAAGGGATATGATGATGAAAGAAAATGAAGGAATAGGAAACTCTGGGTTTAGCTGTAATTCATCTCCATGTCCTACAAAGAGTACACGTATTTCATGA 450 0.4133 MSNDAVCFYSVLGIGKHSTDGEIRCAYRKMAMKWHPDRCSKDPKFALEAKKQFQLVQEAYSVLSNTGKRRIYDAGLFGLIGEDDDEGFVDFMQEMILMMQNVRPKDEKGTMEDLQGLLRDMMMKENEGIGNSGFSCNSSPCPTKSTRIS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium475g00017 149 MobiDBLite consensus disorder prediction 130 149 - -
Vium475g00017 149 SUPERFAMILY Chaperone J-domain 5 96 IPR036869 -
Vium475g00017 149 PRINTS DnaJ domain signature 9 27 IPR001623 -
Vium475g00017 149 PRINTS DnaJ domain signature 48 68 IPR001623 -
Vium475g00017 149 PRINTS DnaJ domain signature 27 42 IPR001623 -
Vium475g00017 149 Pfam DnaJ domain 8 73 IPR001623 -
Vium475g00017 149 CDD DnaJ 7 65 IPR001623 -
Vium475g00017 149 Gene3D DnaJ domain 1 86 IPR036869 -
Vium475g00017 149 SMART dnaj_3 6 68 IPR001623 -
Vium475g00017 149 MobiDBLite consensus disorder prediction 129 149 - -
Vium475g00017 149 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Vium475g00017 149 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Vium475g00017 149 PANTHER PUTATIVE, EXPRESSED-RELATED 4 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium475g00017 Vium-Chr475 152798 153935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium475g00017 7 74 C2H2 Transcription Factor Family AT1G74250 44.928 1.41e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium475g00017 - - pvu:PHAVU_001G210400g 263.462