Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium475g00010 ATGGCGACGAGAAATCGAACAGTGGAGTTTAGGAAGCACAGAGACGCCGTGAAGAGCGTGCGTGCTCCTCTCTCTTCCTCCGCCGCATCTGCTTCTTCCACCGGTCCCGTCATTGAAATGGTTTCGCTTCTTCCTTCCAATCGATCATCCTATGCTCCATTAAGCACCGATGACCCATCCACCTCTAGGGATGCGGTTACTGTGGGGTTGCCGCCGTCTTGGGTGGATGATTCTGAAGAAATAGCTGCGGCTATACAACGTGCTCGGGTTAAAATTTCTGATTTAACTAAAGCTCATTCGAAGGCTTTGTTGCCTTCCTTTGGGGATGACAAAGAGGACCAGCGTCTTATTGAGACTCTCACCCAGGAAATTACATCTCTTCTTAGAAAATCTGAAGTGAGGCTGAAAAGACTTTCTGCTGCTAGCGGATCTTCTGAGGATTCTAATGTTAGAAAAAACGTACAGCGTTCCCTTGCTATAGACCTTCAGAACCTATCAATGGATCTTCGGCGAAAGCAGTCAGCATACTTGAAACGTCTGCAACAGCAAAAAGAGGGTTTTGACGGGGTTGACTTGGAGATGAACTTTAACGGGAGTAAATTTGGATCACGTGATGATGAATTCAGTGATGTGGGTTTTAGTGAAGAGCAGATGACAAAGCTAAAGAAAAGTGAGCAGTTCTCAGTGGAAAGGGAGAGAGAGATTGAACAGGTTGTTAAATCAGTCCATGAACTTGCTCAAATCATGAAGGATCTCTCTGTCCTAGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTATAACATTCAGAGTGTTTCTACGTCCGTTGAAGAGGGCCTCAAGCAGTTGCAAAAGGCAGAGAGAACACAGAAAAAAGGAGGGATGATTATGTGTGCAACATCACTTGTTATAATGTGCTTTATCATGCTAGTTCTCTTGATACTCAAAGAGATCCTCTTCTAG 966 0.4472 MATRNRTVEFRKHRDAVKSVRAPLSSSAASASSTGPVIEMVSLLPSNRSSYAPLSTDDPSTSRDAVTVGLPPSWVDDSEEIAAAIQRARVKISDLTKAHSKALLPSFGDDKEDQRLIETLTQEITSLLRKSEVRLKRLSAASGSSEDSNVRKNVQRSLAIDLQNLSMDLRRKQSAYLKRLQQQKEGFDGVDLEMNFNGSKFGSRDDEFSDVGFSEEQMTKLKKSEQFSVEREREIEQVVKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEEGLKQLQKAERTQKKGGMIMCATSLVIMCFIMLVLLILKEILF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium475g00010 321 ProSitePatterns Syntaxin / epimorphin family signature. 231 270 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium475g00010 321 CDD SNARE_syntaxin16 230 286 - -
Vium475g00010 321 Gene3D - 71 279 - -
Vium475g00010 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 225 287 IPR000727 -
Vium475g00010 321 PANTHER SYNTAXIN 77 308 IPR045242 -
Vium475g00010 321 FunFam Syntaxin-43 71 279 - -
Vium475g00010 321 SUPERFAMILY t-snare proteins 70 280 IPR010989 GO:0016020|GO:0016192
Vium475g00010 321 Pfam SNARE domain 261 313 IPR000727 -
Vium475g00010 321 SMART tSNARE_6 220 287 IPR000727 -
Vium475g00010 321 SMART SynN_4 65 181 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium475g00010 Vium-Chr475 94358 98764 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium475g00010 1 310 SNARE and Associated Proteins AT3G05710 67.901 7.11e-155 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium475g00010 K08489 - gmx:100803629 534.258