Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium475g00002 ATGGGAAGGGCTCCTTGTTGTGAGAAGGTGGGAATGAAGAAGGGGAGGTGGACGGCGGAGGAAGATGAGATTTTGACCAAGTACATTCAGGCCAATGGAGAAGGTTCTTGGAGGACGTTGCCAAAAAATGCAGGATTGTTAAGATGTGGGAAGAGTTGCAGGTTAAGGTGGATTAACTATTTGAGAGCTGATCTAAAGAGAGGAGACATTTCTCTCGAGGAAGAAAACACCATTGTCAAGTTGCATGCTTCGTTAGGCAACAGGTGGTCCTTGATAGCAAGCCACTTGCCAGGAAGAACCGACAACGAGATTAAAAATTACTGGAACTCTAACTTAAGCAGAAAAATTTACACTTTCCGAGGCACAACTAATACCAAACCAGACATCATCACTCTCACTCTACCTCCCAAGAGGAAACGTGGTAGGACAAGTCGCTGGGCCATGAAGAAGAACAAGACATATTGCGCCCCTAAACAAAAGCAACAGCTCTTACCAGCAGTTCCTCTTCCACCAACACCTCCACTTGAGACCGAGAAACATTCTTTCACCCATGAGAATACTACTACTCAAGAAGAAGAAAACCTAGTCACTAATGCCACATGGGTTGAGGGTGAGAAAGAAATAATGAACATCTGGGGACCCTATGACGAGGAATTTATTAATGGGGGAGATGGGGATCAAGTGTTGTGTTTTGAATCTTTCAACGACATCATGAACAGCTACTGTTCCCAAGCAAGTGGGTGTTGGACCATTTCTGATGAAGGTTACAGTGAGAGCAGTGAAGTGGTTGGGAATAAAACTTGTGACCACACCGTTTTGTCGAGTGGTCGGGAGAAGCAGTGCTTTTGTTCAACCAAGTTTTCTTCTGATTCTGACTTATGCCAAAGCGCGGCACAGCTGGATCATAAGGATGAGTCTCTGCTGGATCATAAGGATGAGCCTCTGCTGGATCATAAGGATGAGTCTGTGTCGTGGGAGCAGCATCAGAGCCTCCTCTCTTGGCTTTGCGAAGATGAAGATTGGGAGAAGGATTTGCAGAGCGTTGGTGAGATTGATCCTCAGAAACAAAAGGACATGGTTGATTGGTTTCTCTCTTGA 1098 0.4545 MGRAPCCEKVGMKKGRWTAEEDEILTKYIQANGEGSWRTLPKNAGLLRCGKSCRLRWINYLRADLKRGDISLEEENTIVKLHASLGNRWSLIASHLPGRTDNEIKNYWNSNLSRKIYTFRGTTNTKPDIITLTLPPKRKRGRTSRWAMKKNKTYCAPKQKQQLLPAVPLPPTPPLETEKHSFTHENTTTQEEENLVTNATWVEGEKEIMNIWGPYDEEFINGGDGDQVLCFESFNDIMNSYCSQASGCWTISDEGYSESSEVVGNKTCDHTVLSSGREKQCFCSTKFSSDSDLCQSAAQLDHKDESLLDHKDEPLLDHKDESVSWEQHQSLLSWLCEDEDWEKDLQSVGEIDPQKQKDMVDWFLS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium475g00002 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium475g00002 365 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium475g00002 365 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium475g00002 365 CDD SANT 16 61 IPR001005 -
Vium475g00002 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium475g00002 365 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium475g00002 365 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Vium475g00002 365 Gene3D - 13 66 - -
Vium475g00002 365 Gene3D - 71 116 - -
Vium475g00002 365 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 190 - -
Vium475g00002 365 FunFam Myb transcription factor 11 67 - -
Vium475g00002 365 CDD SANT 71 112 IPR001005 -
Vium475g00002 365 SMART sant 13 63 IPR001005 -
Vium475g00002 365 SMART sant 66 114 IPR001005 -
Vium475g00002 365 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium475g00002 Vium-Chr475 20372 24279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium475g00002 1 309 MYB Transcription Factor Family AT5G49330 44.379 7.55e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium475g00002 Myb_DNA-binding 2.3e-12 CL0123