Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium475g00001 ATGGCGCATCGAAGAGTCAATCTCTTGTTCCTTCTGTGCGCTCTCTGCTATTGTCTTAGTGCCATTGCTGGGAAGAGCTATTACGATATACTTCAAGTGTCGAAGGGTGCATCGGACGATCAGATAAAGAGGGCGTATCGGAAGCTAGCCTTGAAGTATCATCCTGATAAGAACCCGGGCAATGAAGAAGCGAACAGGAAATTTGCTGAGATTAACAATGCGTATGAAGTGTTGTCGGATAGGGAGAAGAGGGGTATTTATGACAGGTACGGTGAGGAGGGTTTGAAGCAGCATGCTGCTGGTGGAGGTGGAGGTGGTGGAATGAATTTCCAGGATATTTTTAGCACTTTCTTTGGTGGAGGATCGATGGAGGAAGAAGAGAAAATTGTAAAAGGAGATGACGTGGTTGTTGAATTGGATGCAACACTTGAAGATTTGTACATGGGGGGTACCTTGAAGGTTTGGAGGGAAAAGAATGTACTAAAGTCAGCACCTGGGAAAAGACGATGTAACTGTAGAAATGAGGTTTATCACAAGCAAATTGGGCCTGGGATGTTTCAACAAATGACAGAGCAGGTTTGTGAGCAATGTCCTAATGTCAAATACGTAAGGGAGGGGTATTTCGTCACAGTTGATATTGAGAAAGGCATGCAAGATGGACAGGAGGTGCTGTTTTATGAGGATGGTGAGCCAATAATTGATGGAGAATCTGGAGATTTAAGGTTTCGTATCCGTACTGCACCACATGATCTCTTTAGAAGAGAAGGCAATGACTTGCACACTACTGTCACTATAACTCTGGTTCAAGCCCTTGTTGGTTTTGAGAAGACCATTACACACCTAGATGAGCATCTGGTGAACATAGGCACAAAGGAAATCACAAAACCAAAGCAGGTGAGGAAGTTCAAAGGGGAGGGTATGCCATTGCATATGAACAACAAAAAGGGAGATCTTTACGTCACTTTTGAGGTTCTATTCCCCACGTCACTAACGGAGGATCAGAAAACAAAGATAAAAACAATTCTTGGTTAG 1032 0.436 MAHRRVNLLFLLCALCYCLSAIAGKSYYDILQVSKGASDDQIKRAYRKLALKYHPDKNPGNEEANRKFAEINNAYEVLSDREKRGIYDRYGEEGLKQHAAGGGGGGGMNFQDIFSTFFGGGSMEEEEKIVKGDDVVVELDATLEDLYMGGTLKVWREKNVLKSAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCPNVKYVREGYFVTVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHDLFRREGNDLHTTVTITLVQALVGFEKTITHLDEHLVNIGTKEITKPKQVRKFKGEGMPLHMNNKKGDLYVTFEVLFPTSLTEDQKTKIKTILG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium475g00001 343 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Vium475g00001 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 336 IPR008971 GO:0006457|GO:0051082
Vium475g00001 343 CDD DnaJ_C 133 330 - -
Vium475g00001 343 Gene3D - 127 248 - -
Vium475g00001 343 FunFam DnaJ subfamily B member 11 248 343 - -
Vium475g00001 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 130 259 IPR008971 GO:0006457|GO:0051082
Vium475g00001 343 Coils Coil 61 81 - -
Vium475g00001 343 Pfam DnaJ C terminal domain 136 327 IPR002939 -
Vium475g00001 343 Gene3D DnaJ domain 23 126 IPR036869 -
Vium475g00001 343 Gene3D - 249 327 - -
Vium475g00001 343 SUPERFAMILY Chaperone J-domain 23 122 IPR036869 -
Vium475g00001 343 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Vium475g00001 343 PRINTS DnaJ domain signature 63 83 IPR001623 -
Vium475g00001 343 PRINTS DnaJ domain signature 83 102 IPR001623 -
Vium475g00001 343 PRINTS DnaJ domain signature 28 46 IPR001623 -
Vium475g00001 343 PRINTS DnaJ domain signature 46 61 IPR001623 -
Vium475g00001 343 CDD DnaJ 27 80 IPR001623 -
Vium475g00001 343 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 11 7 342 - -
Vium475g00001 343 SMART dnaj_3 25 83 IPR001623 -
Vium475g00001 343 FunFam DnaJ protein ERDJ3B 23 127 - -
Vium475g00001 343 Pfam DnaJ domain 27 88 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium475g00001 Vium-Chr475 9361 14504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium475g00001 27 90 C2H2 Transcription Factor Family AT1G74250 43.478 6.25e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium475g00001 K09517 - gmx:100799701 628.632