Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4753g00010 ATGTCAAAAATTTCAGGTGACGAAGGAAGTTTCTCCTCAGCAAACACTGTGGAAGAAGTTCATGAAGAAAGCGAGCAACAACAGCCACAAAAGCGGCATGGCTCAAGTTCTGGGGCTTGCAACACCAATAGATCAACTAATCAACAGCAGCAGCAGCAGCAGCAGCAAGCAACCAAGAAGAAAAGAAACCTACCTGGAACCCCAGGCAAATATTCAAACCTCAATCCGAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTTTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAAAGAGCAAGCAACGAGGTGAAGAAAAGGGTTTATGTGTGCCCTGAGCCCTCATGCGTCCACCACAACCCAGCTCGAGCATTAGGAGACCTCACCGGCATAAAAAAACATTACAGCAGAAAACATGGTGAAAAAAAGTGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTCCAATCTGATTGGAAGGCCCACCACAAAACCTGTGGCACCAGGGAATACAAATGTGATTGTGGGACCATATTTGCCAGAAGAGACAGCTTTATCACACACAGGGCCTTTTGTGACGCATTAACCGAAGAAAACAACCGAGTAAACCCTTCATTAACGAGTGGCACTGGCATGACACCAAGCTTGCAAAATGAATTGCAGGAGCTCATGGCCACAATGCCTCTAAGCACTAGTTCAAACAACGCAGTACCAGAATTCAACAACAGCTACGAGTCTAGTAATAGCCCACTCAAAAGCCTATCCCAAGAACATCTTGTCCCAATGCCATTTAAGTCCATGAGCATGAGGGGTTGCATGTCCTCTACCACTTCAGGTACACTCTTTGGTGGTCCAAAAAACATGTCACTCCCCTTATCTTCCACCCTTCAACTCAGCTCCAACAACTCTCATACTTTCAATTACTTCCAAGACAGCAAGAACTCTGCTGCATCTGCTCACATGTCTGCCACAGCTTTATTACAGAAAGCAGCCCAAATGGGTGCCGCTGCAAGCAATAATACCATTAACTCTTCTCCCACCATGATGCAGAAAAGCTTTGTTAGTGGCATCATTGGTCCTCACCCCAATCATAGTCCTTCTTCCTATGACCCCTTCCATCATCCGGATCAGCACCCTGATGATCAATCTCACATGACTGGGATTAGGGATGCTGGAGCATTCACAAACCAATTTGTCCACAAGGGGCAGCAAGAAATGTCAGCAATGCTTGATTCCAACACCAGTGATATGGGAATCTTCGGTGCAATGTTCATGGGAAGTGACCACAACCAAGGCGTGATGAAGAACGTGGAACAAGAGGTTGGGGCTAGTAGTTCAAGTTTCATTCGTAGAAGAGATGTATCAGAAGGAAATCCAACGGGGGCTTCAAGGTTTGGAGGTGCTGACATGACAATGATCCATGATTTCTTGGGCGTTGGGGGTGCAACTTCAAGAGCAGGGAGTTTGCATGAACAACAGCAAAGTTTGGAGTTAGAAGCATTAACCCATCAGAGGTTACAGATGATTAATCACTTTCACCACCACCTTCCACATGGAGATTCTGCTATGGAGAAGTCCGTTTGGGACATTTAA 1671 0.456 MSKISGDEGSFSSANTVEEVHEESEQQQPQKRHGSSSGACNTNRSTNQQQQQQQQQATKKKRNLPGTPGKYSNLNPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRASNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHHKTCGTREYKCDCGTIFARRDSFITHRAFCDALTEENNRVNPSLTSGTGMTPSLQNELQELMATMPLSTSSNNAVPEFNNSYESSNSPLKSLSQEHLVPMPFKSMSMRGCMSSTTSGTLFGGPKNMSLPLSSTLQLSSNNSHTFNYFQDSKNSAASAHMSATALLQKAAQMGAAASNNTINSSPTMMQKSFVSGIIGPHPNHSPSSYDPFHHPDQHPDDQSHMTGIRDAGAFTNQFVHKGQQEMSAMLDSNTSDMGIFGAMFMGSDHNQGVMKNVEQEVGASSSSFIRRRDVSEGNPTGASRFGGADMTMIHDFLGVGGATSRAGSLHEQQQSLELEALTHQRLQMINHFHHHLPHGDSAMEKSVWDI 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4753g00010 556 Pfam Zinc finger, C2H2 type 94 116 IPR013087 -
Vium4753g00010 556 MobiDBLite consensus disorder prediction 384 411 - -
Vium4753g00010 556 MobiDBLite consensus disorder prediction 1 17 - -
Vium4753g00010 556 Gene3D Classic Zinc Finger 149 228 - -
Vium4753g00010 556 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 520 IPR031140 -
Vium4753g00010 556 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Vium4753g00010 556 FunFam protein indeterminate-domain 5, chloroplastic-like 148 227 - -
Vium4753g00010 556 SUPERFAMILY beta-beta-alpha zinc fingers 93 190 IPR036236 -
Vium4753g00010 556 SMART c2h2final6 135 165 IPR013087 -
Vium4753g00010 556 SMART c2h2final6 94 116 IPR013087 -
Vium4753g00010 556 SMART c2h2final6 170 190 IPR013087 -
Vium4753g00010 556 MobiDBLite consensus disorder prediction 30 75 - -
Vium4753g00010 556 MobiDBLite consensus disorder prediction 397 411 - -
Vium4753g00010 556 MobiDBLite consensus disorder prediction 1 75 - -
Vium4753g00010 556 FunFam protein indeterminate-domain 12-like 73 141 - -
Vium4753g00010 556 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Vium4753g00010 556 Gene3D Classic Zinc Finger 72 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4753g00010 Vium-Chr4753 82934 86365 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4753g00010 37 368 IDZ Gene Family AT3G50700 51.714 2.74e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium4753g00010 zf-C2H2 0.0057 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4753g00010 - - gmx:100797943 740.339