Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4753g00006 ATGGACTTGTACGGTCGGACCCCCGCCAGGAATGGATCCAACCCGGTTAACCAACCCGAATGGCGCTCACCGGGCACCGACACTGCTCTCGAAGAATCCATGTGGCATTTAACGTTGGGTGGTGGGGAATCTTACCCGGAGCGGCTCGGTGTGCCCAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGAGGCAGGTGTCGTTACAATCATCCTCGTGACCGTGCTGCGGTTGCTGCGGCAGTAAGAGCTACAGGGGAGTACCCAGAAAGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACGGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCTAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTCTACGGATACCCATTAAGGCCTGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGTACGTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACAGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCTTCAAGCTTGAGAGTGGCTAGGCCTCCTATGTTGCCTGGTTCATATGTTCAAGGGGCCTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCCATTTCCCGGATGGAGTCCTTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGTGCTCAACCTGCCGTTGGGGGTACATCTTTATATGGAATGACCCAGTTATCATCACCAACATCAGCTTTTGCAAGACCATATACTCCCCTTCCCTCTACTTCTGGCCCTTTAGGAAGCAGCCTGAAGGAACAATTATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGAGATCATATTGTGGCACGGCCACTTCTTAACCCTGTTGGACTTCCTTTACGTCCGGGCCCTCCACTCAAAAAGTATTTGGACTTTGAAATCCTCATTTCAGGTTAG 1074 0.487 MDLYGRTPARNGSNPVNQPEWRSPGTDTALEESMWHLTLGGGESYPERLGVPNCVYYMRTGVCGYGGRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPMLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVPSPGAQPAVGGTSLYGMTQLSSPTSAFARPYTPLPSTSGPLGSSLKEQLFPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLNPVGLPLRPGPPLKKYLDFEILISG 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4753g00006 357 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Vium4753g00006 357 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Vium4753g00006 357 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Vium4753g00006 357 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Vium4753g00006 357 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Vium4753g00006 357 SUPERFAMILY CCCH zinc finger 51 77 IPR036855 GO:0046872
Vium4753g00006 357 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Vium4753g00006 357 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Vium4753g00006 357 MobiDBLite consensus disorder prediction 10 24 - -
Vium4753g00006 357 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Vium4753g00006 357 FunFam Zinc finger nuclease 2 47 124 - -
Vium4753g00006 357 PANTHER PROTEIN PHOSPHATASE RELATED 40 347 - -
Vium4753g00006 357 Gene3D - 126 173 - -
Vium4753g00006 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 75 IPR000571 GO:0046872
Vium4753g00006 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Vium4753g00006 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Vium4753g00006 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Vium4753g00006 357 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Vium4753g00006 357 MobiDBLite consensus disorder prediction 1 25 - -
Vium4753g00006 357 Gene3D - 282 333 - -
Vium4753g00006 357 Gene3D - 46 121 - -
Vium4753g00006 357 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Vium4753g00006 357 SUPERFAMILY CCCH zinc finger 301 324 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4753g00006 Vium-Chr4753 27904 32085 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4753g00006 20 342 C2H2 Transcription Factor Family AT5G18550 53.644 1.33e-115 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium4753g00006 zf-CCCH 7.6e-09 CL0537