Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4753g00003 ATGGACTTGTACGGTCGGGCCCCCGTCAGGAACGGATCCAACCCGGTCAACCAACCCGAATGGCCTTCACCGGGCATCGACGCTGCTCTCGAAGAATCCATGTGGCATTTAACCCTCGGTGGTGGCGAATCTTACCCGGAGCGGCCCGGCGTGCCCAATTGTGTGTATTATATGCGAACCGGTGTGTGCGGATACGGTAGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGTTGCGGCGGTAAGAGCTACAGGGGAGTACCCTGAACGGGTGGGGGAACCTCCATGTCAGTACTATTTAAAGACTGGAACCTGTAAATTTGGAGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGTCAAGCTCCACTAAATACTTACGGATACCCATTAAGACCGGGTGAGAAAGAGTGCTCCTATTATTTAAAAACGGGGCAGTGCAAATTTGGTGTTACCTGTAAATTCCATCATCCTCAACCTGCTGGCACACCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACCGTTCCTGTGCCTGAACAGTATGCAGGAGCTTCGGCAAACTTGAGAGTGGCCAGGCCCCCTGTATTGTCTGGTTCCTATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTGCAATTTCCTGGATGGAGTCCTTATTCGGCACCTGTAAGTCCTGTGCTATCTCCTGGTGCTCAACCTGCTGTTGGGGCCACTTCTTTATATGGAGTGACCCAATTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCGCTGTCCTCTACTACTGGACCTTCAGGAAACATACTTAAGGATCAATTATTTCCTGAAAGACCCGGTGAACCCGAATGCCAATACTTTCTGAGAACGGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGACCATATTGTTGCACGGCCATTTCTTAGCTCAATTGGACTTCCTTTACGACCGGGCGTACAACCTTGCGTTTTTTATTTGCAAAACGGGCATTGCAAGTTTGGCTCCACATGCAAATTTGACCATCCTTTGGGATCTTTGAGCTACAGTCCATCGGTATCTTCTTTCATTGATGTGCCAGTTACTCCATACCCGGTGGGGTCTTTGCTGTCTCAACTGGCTCCTTCTACAACATCTTCAGAGCTTCGGCCTGAACTGATGTCTGGGTCCAAAAAGGAATCCCTTTCAGCCAGAATACCTTCTTCTGGTACTTCTGTCGGTCTAATTTTCTCACAAGGTGGTTCTATCTCGTTATCTGATGTGCAACTCTCGAGTCAGAGTTCTGCCCCTCTTGGCAGTAGCAGAAGCAACAGACAAAGCGGTGAGATACGTTGA 1404 0.4879 MDLYGRAPVRNGSNPVNQPEWPSPGIDAALEESMWHLTLGGGESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRAAVVAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNTYGYPLRPGEKECSYYLKTGQCKFGVTCKFHHPQPAGTPLPASAPQFYQQVQSPTVPVPEQYAGASANLRVARPPVLSGSYVQGAYGPVLLSPGVVQFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLSSTTGPSGNILKDQLFPERPGEPECQYFLRTGDCKFGLACRYHHPRDHIVARPFLSSIGLPLRPGVQPCVFYLQNGHCKFGSTCKFDHPLGSLSYSPSVSSFIDVPVTPYPVGSLLSQLAPSTTSSELRPELMSGSKKESLSARIPSSGTSVGLIFSQGGSISLSDVQLSSQSSAPLGSSRSNRQSGEIR 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4753g00003 467 FunFam Zinc finger nuclease 2 47 124 - -
Vium4753g00003 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Vium4753g00003 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Vium4753g00003 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Vium4753g00003 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Vium4753g00003 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Vium4753g00003 467 SUPERFAMILY CCCH zinc finger 342 370 IPR036855 GO:0046872
Vium4753g00003 467 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Vium4753g00003 467 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Vium4753g00003 467 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Vium4753g00003 467 Gene3D - 295 377 - -
Vium4753g00003 467 Gene3D - 50 122 - -
Vium4753g00003 467 PANTHER PROTEIN PHOSPHATASE RELATED 42 388 - -
Vium4753g00003 467 MobiDBLite consensus disorder prediction 1 21 - -
Vium4753g00003 467 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Vium4753g00003 467 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Vium4753g00003 467 MobiDBLite consensus disorder prediction 444 467 - -
Vium4753g00003 467 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Vium4753g00003 467 Gene3D - 127 171 - -
Vium4753g00003 467 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Vium4753g00003 467 SUPERFAMILY CCCH zinc finger 301 324 IPR036855 GO:0046872
Vium4753g00003 467 MobiDBLite consensus disorder prediction 403 425 - -
Vium4753g00003 467 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Vium4753g00003 467 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Vium4753g00003 467 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Vium4753g00003 467 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Vium4753g00003 467 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Vium4753g00003 467 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4753g00003 Vium-Chr4753 21063 25306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4753g00003 1 440 C2H2 Transcription Factor Family AT5G18550 49.892 4.55e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium4753g00003 zf-CCCH 5.2e-08 CL0537