Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4753g00002 ATGGACTTGTACGGTCGGGCCCCCGTCAGGAACGGATCCAACCCGGTCAACCAACCCGAATGGCCTTCACCGGGCATCGACGCTGCTCTCGAAGAATCCATGTGGCATTTAACCCTCGGTGGTGGCGAATCTTACCCGGAGCGGCCCGGCGTGCCCAATTGTGTGTATTATATGCGAACCGGTGTGTGCGGATACGGTAGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGTACTATTTAAAGACTGGAACCTGTAAATTTGGAGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGTCAAGCTCCACTAAATACTTACGGATACCCATTAAGACCGGGTGAGAAAGAGTGCTCCTATTATTTAAAAACGGGGCAGTGCAAATTTGGTGTTACCTGTAAATTCCATCATCCTCAACCTGCTGGCACACCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACCGTTCCTGTGCCTGAACAGTATGCAGGAGCTTCGGCAAACTTGAGAGTGGCCAGGCCCCCTGTATTGTCTGGTTCCTATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTGCAATTTCCTGGATGGAGTCCTTATTCGGCACCTGTAAGTCCTGTGCTATCTCCTGGTGCTCAACCTGCTGTTGGGGCCACTTCTTTATATGGAGTGACCCAATTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCGCTGTCCTCTACTACTGGACCTTCAGGAAACATACTTAAGGATCAATTATTTCCTGAAAGACCCGGTGAACCCGAATGCCAATACTTTCTGAGAACGGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGACCATATTGTTGCACGGCCATTTCTTAGCTCAATTGGACTTCCTTTACGACCGGGCGTACAACCTTGCGTTTTTTATTTGCAAAACGGGCATTGCAAGTTTGGCTCCACATGCAAATTTGACCATCCTTTGGGATCTTTGAGCTACAGTCCATCGGTATCTTCTTTCATTGATGTGCCAGTTACTCCATACCCGGTGGGGTCTTTGCTGTCTCAACTGGCTCCTTCTACAACATCTTCAGAGCTTCGGCCTGAACTGATGTCTGGGTCCAAAAAGGAATCCCTTTCAGCCAGAATACCTTCTTCTGGTACTTCTGTCGGTCTAATTTTCTCACAAGGTGGTTCTATCTCGTTATCTGATGTGCAACTCTCGAGTCAGAGTTCTGCCCCTCTTGGCAGTAGCAGAAGCAACAGACAAAGCGGTGAGATACGTTGA 1341 0.4825 MDLYGRAPVRNGSNPVNQPEWPSPGIDAALEESMWHLTLGGGESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRAAYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNTYGYPLRPGEKECSYYLKTGQCKFGVTCKFHHPQPAGTPLPASAPQFYQQVQSPTVPVPEQYAGASANLRVARPPVLSGSYVQGAYGPVLLSPGVVQFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLSSTTGPSGNILKDQLFPERPGEPECQYFLRTGDCKFGLACRYHHPRDHIVARPFLSSIGLPLRPGVQPCVFYLQNGHCKFGSTCKFDHPLGSLSYSPSVSSFIDVPVTPYPVGSLLSQLAPSTTSSELRPELMSGSKKESLSARIPSSGTSVGLIFSQGGSISLSDVQLSSQSSAPLGSSRSNRQSGEIR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4753g00002 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 302 IPR000571 GO:0046872
Vium4753g00002 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Vium4753g00002 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 80 99 IPR000571 GO:0046872
Vium4753g00002 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 345 IPR000571 GO:0046872
Vium4753g00002 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 145 IPR000571 GO:0046872
Vium4753g00002 446 SMART c3hfinal6 118 145 IPR000571 GO:0046872
Vium4753g00002 446 SMART c3hfinal6 76 99 IPR000571 GO:0046872
Vium4753g00002 446 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Vium4753g00002 446 SMART c3hfinal6 275 302 IPR000571 GO:0046872
Vium4753g00002 446 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Vium4753g00002 446 ProSiteProfiles Zinc finger C3H1-type profile. 118 146 IPR000571 GO:0046872
Vium4753g00002 446 MobiDBLite consensus disorder prediction 423 446 - -
Vium4753g00002 446 Gene3D - 274 356 - -
Vium4753g00002 446 Gene3D - 44 78 - -
Vium4753g00002 446 Gene3D - 79 151 - -
Vium4753g00002 446 ProSiteProfiles Zinc finger C3H1-type profile. 275 303 IPR000571 GO:0046872
Vium4753g00002 446 PANTHER PROTEIN PHOSPHATASE RELATED 42 367 - -
Vium4753g00002 446 MobiDBLite consensus disorder prediction 1 21 - -
Vium4753g00002 446 MobiDBLite consensus disorder prediction 382 404 - -
Vium4753g00002 446 SUPERFAMILY CCCH zinc finger 120 146 IPR036855 GO:0046872
Vium4753g00002 446 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Vium4753g00002 446 SUPERFAMILY CCCH zinc finger 321 349 IPR036855 GO:0046872
Vium4753g00002 446 ProSiteProfiles Zinc finger C3H1-type profile. 80 100 IPR000571 GO:0046872
Vium4753g00002 446 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Vium4753g00002 446 SUPERFAMILY CCCH zinc finger 280 303 IPR036855 GO:0046872
Vium4753g00002 446 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4753g00002 Vium-Chr4753 21063 25308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4753g00002 1 419 C2H2 Transcription Factor Family AT5G18550 47.527 4.30e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium4753g00002 zf-CCCH 4.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4753g00002 - - vun:114192085 880.937