Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4752g00006 ATGAGGGAGCTATGGAGTCAAATGGGATCGTTAATGGCAACTGTGGTGTTCATGTACACCGTTTTTGAGCGATTCTTCCCTTCTTCCTTTCGTGACCGTCTTCAGGCCTATGCTCAAAAAGTGACAAACCATTTCAATCCTTACATCCAAATTACCTTTCCTGAATTTTCAGGAGAAAGACTGAAGAAAAGTGAAGCATACAATGCCATCCAAACCTACCTCAGTGCAAACTCATCTCAGAGAGCCAAAAGACTCAAAGCTGAAGTGGTGAAGGATAGCCAAACCCCACTGGTCCTCAGCATGGATGACAATGAAGAGATCACTGATGAGTTCCAAGGTGTCAAAGTGTGGTGGAGTGCAAACAAAGTAAGCTCCAATCCACAGAGGTACAACCCTTTCTCTTACTACGGTTCCTCTGATGAGAAAAGGTTCTACAAGCTCACCTTCCACAGAAGCCACCGTGATATCATCACCATGTCTTACATCAAGCATGTGTTGGAAGAGGGGAAGGAAATTGAGTTGACAAACAGGCAGTTGAAGCTTTACACCAACAATCCTAGCAGTGGTTGGTATGGTTACAAGCAGTCAAAGTGGAGCCACATAGTGTTTGAGCACCCTGCCTCTTTTGAAACACTGGCAATGGATCCGAAAAGGAAGGAAGATATCCTGAAAGACCTTGCCAAATTTAAGAAGGGAAAGGAGTATTATTCAAAGATAGGTAAGGCTTGGAAAAGAGGGTATCTTTTGTATGGCCCTCCAGGGACCGGGAAGTCTACCATGATAGCTGCTATTGCTAAGTTCATGAACTATGATGTGTATGATCTTGAATTGACAGCAGTGAAGGACAACACTGAGTTGAGAAAGTTGTTGATTGAAACTCCAAGTAAGTCTATTACCGTGATTGAGGACATTGATTGTTCTCTTGATCTTACTGGGCAGAGGAAGAAGAAAAAGGAAGAGGTTGAGAATGAAGAACAAAAAGATCCTATGAGGAAGAATGAAGAGGAGAGTAGCAAGAGCAGCAAGGTAACTCTATCTGGGTTGCTGAATTTTATTGATGGGATTTGGTCAGCTTGTGGAGGTGAGAGGATCATCATTTTCACCACAAATTATGTGGAGAAACTTGACCCTGCTCTCATCAGGAGAGGGAGGATGGATAAGCACATTGAGATGTCCTATTGTTGTTTTGATGCATTCAAGGTGCTGGCCAAAAACTACTTGGATGTTGAGTCCCACCTTTTGTTTGGTAGAATTGGGAATTTGTTGAAAGAGACAGAAATGTCACCTGCTGATGTTGCTGAGAATCTAATGCCAAAGTCTGAGGATGAAGATGTGGAGACTTGCCTGGAGAATTTGATTATGGCTCTTGAGAAGAACAAGGAAGAAAATGCAAAGAAAAAGGCAGAAGAAGAAGCACAGAAAAAGTTGGAGGAGGAGAAAGCCAAAGAAGAATCTACTCAGAATAAGGAAATAAACCAAGAAAAAACTAGGGAGAATAAGGTGAAGGAAAATGGGTTTTGTTGA 1524 0.4226 MRELWSQMGSLMATVVFMYTVFERFFPSSFRDRLQAYAQKVTNHFNPYIQITFPEFSGERLKKSEAYNAIQTYLSANSSQRAKRLKAEVVKDSQTPLVLSMDDNEEITDEFQGVKVWWSANKVSSNPQRYNPFSYYGSSDEKRFYKLTFHRSHRDIITMSYIKHVLEEGKEIELTNRQLKLYTNNPSSGWYGYKQSKWSHIVFEHPASFETLAMDPKRKEDILKDLAKFKKGKEYYSKIGKAWKRGYLLYGPPGTGKSTMIAAIAKFMNYDVYDLELTAVKDNTELRKLLIETPSKSITVIEDIDCSLDLTGQRKKKKEEVENEEQKDPMRKNEEESSKSSKVTLSGLLNFIDGIWSACGGERIIIFTTNYVEKLDPALIRRGRMDKHIEMSYCCFDAFKVLAKNYLDVESHLLFGRIGNLLKETEMSPADVAENLMPKSEDEDVETCLENLIMALEKNKEENAKKKAEEEAQKKLEEEKAKEESTQNKEINQEKTRENKVKENGFC 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4752g00006 507 FunFam AAA-ATPase ASD, mitochondrial 199 389 - -
Vium4752g00006 507 Pfam Domain associated at C-terminal with AAA 26 120 IPR025753 -
Vium4752g00006 507 SMART AAA_5 243 395 IPR003593 GO:0016887
Vium4752g00006 507 PANTHER BCS1 AAA-TYPE ATPASE 7 464 - -
Vium4752g00006 507 Coils Coil 307 327 - -
Vium4752g00006 507 CDD RecA-like_BCS1 222 391 - -
Vium4752g00006 507 Pfam ATPase family associated with various cellular activities (AAA) 248 392 IPR003959 GO:0005524|GO:0016887
Vium4752g00006 507 Gene3D - 390 456 - -
Vium4752g00006 507 ProSitePatterns AAA-protein family signature. 363 382 IPR003960 GO:0005524|GO:0016887
Vium4752g00006 507 Gene3D - 197 389 IPR027417 -
Vium4752g00006 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 440 IPR027417 -
Vium4752g00006 507 Coils Coil 449 494 - -
Vium4752g00006 507 MobiDBLite consensus disorder prediction 460 507 - -
Vium4752g00006 507 MobiDBLite consensus disorder prediction 315 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4752g00006 Vium-Chr4752 40195 41905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4752g00006 222 391 Calmodulin-binding Proteins AT3G56690 26.404 1.05e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4752g00006 - - gmx:100787917 846.654