Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4751g00001 TATCATTTTCGGTTCCTGAAAACCCATGACATTGTTTTTGCCAGCAGACCCAAAACCCAAGCCACAGAATTTCTTTCTTATGGCAGCAAAGGTATGGCCTTTTCTGAGTACGGTGCATACTGGCGCAACGCCAGGAAACTGTGCACTCTGCAGCTTCTGAGTGCCTCAAAGGTTGAGATGTTTGCTCCTCTGAGAAGACAAGAGCTGGGAGTGTTGGTGAAGTCGCTGAAAAATTCTGCAGAATCCGGTGAGGTTGTTGATCTGAGTCAGTTGCTGGGAGAGCTTATGGAGAACATCGTGTTCAAAATGGTGTTGGGGCGTGCCAAAGATGATAGATTTGACTTAAAGTTGCTCATTCACGAAGTGATGAACTTGATTGGATTATTCAATCTTGCAGATTACATGCCCTGGCTAGGCGTGTTTGATCCTCAGGGAATAACAAAAAGATTAAAGAAAACAGCAAAGTCGTTTGATGAGCTATTGGAACAAATAATCCAAGAACACGAAAGTAATCCATATGACGAAAATAAGAATCGCAAGATGGACTTTGTGGATATTTTGCTGTCACTCATGCATCAACCCGACGATTTTCAAGACGCCATTGATAGAACAAACGTGAAAGCTATCATATTAGACATGATAAGTGCAGCATTTGACACATCTTCCACAACAGTAGAATGGGCCATGTCACAACTCTTAAGGCACCCTTCTGTCATGAAGAGACTTCAATAGGAGCTAGAACATGTGGTCGGAATAAACAGACACGTGGAGGAAAATGACTTAGAAAAGTTGTCTTATTTGAACATGGTGGTGAAGGAAACACTAAGGTTACACCCAGTCGGACCTTTGTTGGTACCTCGCGAGTGTCGAGAAGATGTCACCATTGATGGCTATTTGATAAAGAAAAAAACAAGGGTTATGGTAAATGTTTGGGCTATAGGGCGAGATCCTAAAGTTTGGGATAGGGTTGAAATTTTCGACCCTACAAGGTTTGAGAATAACAATGTAGATGTTCGTGGAAAGGACTTTCGGATTTTACCATTTGGGTCGGGTCGAAGAGTGTGCCCCGGGATTCATATGGGTTTAATGACGATTAGTCTTGTTTTGGCTCAATTAGTGCATTGTTTTGATTGGGAGCTTCCATTGGGCATGTCTTGTGATGAGTTAGACATGGAAGAGATATTTGGGCTCACTATACCAAGAAAAAAACATTTATTAACTAGACCAGTTTATCGACTACTTGCTTTCCTGAAAACCCATGACATTGTTTTTGCCAGCAGACCCAAAACCCAAGCCACAGAATTTCTTTCTTATGGCAGCAAAGGTATGGCCTTTTCTGAGTACGGTGCATACTGGCGCAACGCCAGGAAACTGTGCACTCTGCAGCTTCTGAGTGCCTCAAAGGTTGAGATGTTTGCTCCTCTGAGAAGACAAGAGCTGGGAGTGTTGGTGAAGTCGCTGAAAAATTCTGCAGAATCCGGTGAGGTTGTTGATCTGAGTCAGTTGCTGGGAGAGCTTATGGAGAACATCGTGTTCAAAATGGTGTTGGGGCGTGCCAAAGATGATAGATTTGACTTAAAGTTGCTCATTCACGAAGTGATGAACTTGATTGGATTATTCAATCTTGCAGATTACATGCCCTGGCTAGGCGTGTTTGATCCTCAGGGAATAACAAAAAGATTAAAGAAAACAGCAAAGTCGTTTGATGAGCTATTGGAACAAATAATCCAAGAACACGAAAGTAATCCATATGACGAAAATAAGAATCGCAAGATGGACTTTGTGGATATTTTGCTGTCACTCATGCATCAACCCGACGATTTTCAAGACGTCATTGATAGAACAAACGTGAAAGCTATCATATTAGACATGATAAGTGCAGCATTTGACACATCTTCCACAACAGTAGAATGGGCCATGTCACAACTCTTAAGGCACCCTTCTGTCATGAAGAGACTTCAATAGGAGCTAGAACATGTGGTCGGAATAAACAGACACGTGGAGGAAAATGACTTAGAAAAGTTGTCTTATTTGAACATGGTGGTGAAGGAAACACTAAGGTTACACCCAGTCGGACCTTTGTTGGTACCTCGCGAGTGTCGAGAAGATGTCACCATTGATGGCTATTTGATAAAGAAAAAAACAAGGGTTATGGTAAATGTTTGGGCTATAGGGCGAGATCCTAAAGTTTGGGATAGGGTTGAAATTTTCGACCCTACAAGGTTTGAGAATAACAATGTAGATGTTCGTGGAAAGGACTTTCGGATTTTACCATTTGGGTCGGGTCGAAGAGTGTGCCCCGGGATTCATATGGGTTTAATGACGATTAGTCTTGTTTTGGCTCAATTAGTGCATTGTTTTGATTGGGAGCTTCCATTGGGCATGTCTTGTGATGAGTTAGACATGGAAGAGATATTTGGGCTCACTATACCAAGAAAAAAACATTTATTAACTAGACCAGTTTATCGACTACTTGCTTAG 2481 0.4192 YHFRFLKTHDIVFASRPKTQATEFLSYGSKGMAFSEYGAYWRNARKLCTLQLLSASKVEMFAPLRRQELGVLVKSLKNSAESGEVVDLSQLLGELMENIVFKMVLGRAKDDRFDLKLLIHEVMNLIGLFNLADYMPWLGVFDPQGITKRLKKTAKSFDELLEQIIQEHESNPYDENKNRKMDFVDILLSLMHQPDDFQDAIDRTNVKAIILDMISAAFDTSSTTVEWAMSQLLRHPSVMKRLQXELEHVVGINRHVEENDLEKLSYLNMVVKETLRLHPVGPLLVPRECREDVTIDGYLIKKKTRVMVNVWAIGRDPKVWDRVEIFDPTRFENNNVDVRGKDFRILPFGSGRRVCPGIHMGLMTISLVLAQLVHCFDWELPLGMSCDELDMEEIFGLTIPRKKHLLTRPVYRLLAFLKTHDIVFASRPKTQATEFLSYGSKGMAFSEYGAYWRNARKLCTLQLLSASKVEMFAPLRRQELGVLVKSLKNSAESGEVVDLSQLLGELMENIVFKMVLGRAKDDRFDLKLLIHEVMNLIGLFNLADYMPWLGVFDPQGITKRLKKTAKSFDELLEQIIQEHESNPYDENKNRKMDFVDILLSLMHQPDDFQDVIDRTNVKAIILDMISAAFDTSSTTVEWAMSQLLRHPSVMKRLQXELEHVVGINRHVEENDLEKLSYLNMVVKETLRLHPVGPLLVPRECREDVTIDGYLIKKKTRVMVNVWAIGRDPKVWDRVEIFDPTRFENNNVDVRGKDFRILPFGSGRRVCPGIHMGLMTISLVLAQLVHCFDWELPLGMSCDELDMEEIFGLTIPRKKHLLTRPVYRLLA 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4751g00001 826 PANTHER CYTOCHROME P450 93A3-LIKE 5 413 - -
Vium4751g00001 826 CDD CYP71-like 415 816 - -
Vium4751g00001 826 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 348 357 IPR017972 GO:0005506|GO:0016705
Vium4751g00001 826 PRINTS E-class P450 group I signature 309 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 PRINTS E-class P450 group I signature 355 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 PRINTS E-class P450 group I signature 205 222 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 PRINTS E-class P450 group I signature 225 251 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 PRINTS E-class P450 group I signature 268 286 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 PRINTS E-class P450 group I signature 345 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 PRINTS P450 superfamily signature 346 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 PRINTS P450 superfamily signature 269 280 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 PRINTS P450 superfamily signature 216 233 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 FunFam Cytochrome P450 83B1 414 819 - -
Vium4751g00001 826 Pfam Cytochrome P450 4 404 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 Pfam Cytochrome P450 417 815 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 CDD CYP71-like 5 405 - -
Vium4751g00001 826 FunFam Cytochrome P450 83B1 3 408 - -
Vium4751g00001 826 Gene3D Cytochrome P450 3 410 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 Gene3D Cytochrome P450 411 823 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 SUPERFAMILY Cytochrome P450 5 412 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4751g00001 826 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 759 768 IPR017972 GO:0005506|GO:0016705
Vium4751g00001 826 SUPERFAMILY Cytochrome P450 416 823 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4751g00001 Vium-Chr4751 578 13101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4751g00001 417 826 Monolignol Biosynthesis Gene Families AT4G36220 39.906 4.52e-106 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4751g00001 - - vum:124839090 1649.41