Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium474g00001 ATGGCGACGTACTTTCATGGAAGCACTTCGGAGATTCAATCTTCTGCAGATGGCTTGCAAACGCTTTACCTTATGAACCCATCTTACGTACCTTATGCTGACGCGCCGCACCACCCGACACTTCTCGTCAATCCCAACGCTACCAACGCGCTCAACCTCGCGAGTCTCACCCACGCGCCGCCGGTGTCGCCTTCCCCCAACCAGCAGCAGCACGTGATTCACGGCATGGCAAACATCCTCGGATCCGGGAATTCCGATGAGCACGCTCACAGCCGACAGTCGTTGTTCGGGGAAAACATCGCCGCCTTCCACGGTTTCTCCGGCGGGGCATCCTCCGCCGCCCCTCGCGTTCACTATAACCTCTGGGGCTCGGGGGTTGATCAACCTGGAACGCCTTCTAGCAGCTCCGTCGGTGGCGGTTTCCGGCGGCCCAGTCAGCAGGGGTTGTCTCTCAGCCTTTCTTCACATCAAACAAATTTCAGGTCAGTTTCTGGGGAGCTTGATATTGCCGGACAGGGCCACGTCGCCGGAACTGGGAACTCGCCGACGTCGGCTGCGTCAACAGGAGTTTCGGGCCTGATTCTGGGGTCGAAGTATCTGAAGGCGGCGCAGGAGCTTCTGGATGAAGTTGTTAACGTAGGAAAAGGAATCTACAAAGAGGAAAAGTTCTCAGAGAAGGTGAAAGCGAATAGAGAATCTACTAATTCTGGTGCTGGTGGTGGCGATGGTTCGAGTGGTGGAGGAGAAAACAGTGCAGGAAAACAAGTGGTCGAACTCAGCACCGCTCAAAGGCAAGAACTTCAGATGAAGAAGTCCAAGCTTGTCAACATGCTCGACGAGGTGGAACAAAGGTACAGGCAATATCACCACCAAATGCAAATTGTGGTATCATCATTTGAGCAAGCTGCAGGTTATGGGGCTGCAAAATCATACACATCCCTTGCCCTAAAGACTATCTCAAAGCAATTCCGGTGCCTTAAAGATGCAATCTCTGCGCAAATCAAAGCCACGAGCAAGACATTGGGTGAAGATGATTGCTTGGGAGTGAAAGTAGAAGGGTCAAGGCTTAGGTATGTTGACCACCATCTCAGGCAACAAAGGGCACTGCAGCAGCTAGGAATGATTCAGCCCAATGCATGGAGGCCACAAAGAGGCTTGCCAGAACGAGCCGTTTCCATTCTTCGCGCTTGGCTTTTTGAGCATTTTCTTCACCCCTATCCAAAGGACTCAGATAAAGTCATGCTTGCTAAACAAACTGGACTGGCTAGAAGCCAGGTATGTTTCATCAAAGATTATCAGACACCATCAACCGTTGAGTTTAAAAAACTGTTACTTTTTCTTCAAAGCTTTTGA 1353 0.5129 MATYFHGSTSEIQSSADGLQTLYLMNPSYVPYADAPHHPTLLVNPNATNALNLASLTHAPPVSPSPNQQQHVIHGMANILGSGNSDEHAHSRQSLFGENIAAFHGFSGGASSAAPRVHYNLWGSGVDQPGTPSSSSVGGGFRRPSQQGLSLSLSSHQTNFRSVSGELDIAGQGHVAGTGNSPTSAASTGVSGLILGSKYLKAAQELLDEVVNVGKGIYKEEKFSEKVKANRESTNSGAGGGDGSSGGGENSAGKQVVELSTAQRQELQMKKSKLVNMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTSLALKTISKQFRCLKDAISAQIKATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVCFIKDYQTPSTVEFKKLLLFLQSF 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium474g00001 450 MobiDBLite consensus disorder prediction 129 151 - -
Vium474g00001 450 CDD homeodomain 380 426 IPR001356 GO:0003677
Vium474g00001 450 MobiDBLite consensus disorder prediction 225 254 - -
Vium474g00001 450 Pfam Homeobox KN domain 397 427 IPR008422 GO:0003677|GO:0006355
Vium474g00001 450 SMART prehox3 188 332 IPR006563 -
Vium474g00001 450 Pfam Associated with HOX 194 331 IPR006563 -
Vium474g00001 450 Gene3D - 386 430 - -
Vium474g00001 450 SUPERFAMILY Homeodomain-like 375 427 IPR009057 -
Vium474g00001 450 Coils Coil 264 291 - -
Vium474g00001 450 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium474g00001 Vium-Chr474 41261 44209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium474g00001 1 426 Homeobox Transcription Factor Family AT2G35940 50.866 4.02e-111 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium474g00001 - - vum:124842043 854.744