Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4745g00004 ATGGAAAACCCTCACCCTGAGTCAAGGTGTTTGAAGCGTAAGCCTGAAGGAGATCTAAGCCAGGACCAGACAGATTCCAAGGGGCCGTGCCTCTCCTCAAAGATCCGGAAGAAGGTTCTACGTCAGGTTTCTCTCCTTAATTCGACTGCCTCAGACTGTGTCACCGTTAAGAGAGTCATTTACAACCTATCTGTACTTGCGGAAAACGAGGATCTTGCGGATACTTTGATTGATTGCGGTGTTGTCCATGCTCTGGTGAGACATCTTCAACTGTCAGATGCAGGGAACGATGATGATGTTAACCGGGATAAATGTTATGATGACGAAGTTGCCATGCATGAGCAGTTTGAGGTGGCCAAAGGATGTTCGCTCATCATTGAGCTTCTGGCCATCAAACAAGAGCATCAGGACCTCATTGTAGGTGTCGGAGTCTTGCCTTGTCTAGTAGAATTTTTAAAGAGACACAAGATCTGTACTATTTCTGAACCACTAGTTTATCTTTTAAAGAGAGCAGCTGATGCAATAACAAGCTTAGCTCATGAAAATGATGACATCAAGACCCGTGTCAGGAGGGAAGGTGGTATACCTCCATTGGTTGAGTTGCTTGAATTCAATGATGTTAAAGTGCAGAGAGCAGCTGCACGGGCCTTGCGAACTCTTGCATTTAAAAATGATGGCAATAAAAATCAGATAGTTGAATGCAATGCATTACCCACTCTTGTACTAATGCTTGGATCGGAGGATCCTAAATTACATTCTGAGGCGATTGGTGTAATTGGAAATCTGGTCCACTCTTCGCCAAATATCAAGAAAGATGTTCTTTTAGCTGGTGCTTTACAACCTGTCATTTGTTTACTCAGTTCCTGTTGTTCGGAGAGCAAAAGAGAAGCAGCCCTTTTACTCGGTCAGTTTGCCACGATAGATTCAGATTGCAAGGTTCATATTGCCCAACGAGGGGCTATTCCACCATTGGTTGATATGCTGAAGTCTTCTGATGCCGAGCTTCAGGAAATGTCATCTTTTGCACTTGGGAGGTTGGCACAGGACTCGCACAATCAAGCTGGTATTGTTCAAAGTGGAGGTATAGAGCCTCTGCTTAAACTTCTTGACTCAAAGACGACGCTTGTCCAACAAAATGTTGTTTTTGCTCTCTATGGTCTTGCTGATAACGAGGACAACGTTGTTTGTATTATTAAGGCGGATGGCTTTCAAAGACTGAAAGCTGCAAATTTCAAGAATCAACAAACTGTAGAGTGTGCAATGAAGGCGTTAAAAAGATTAGAGGAAAAGACTCAAGGGCGAGTGTTGAAACACCTAATACGTCTTATGTGCTACCCTGAAGAAAAGGTTCAAAGACGTGTAGTTATTGCTCTTGCGTATTTATGTTCTCCTCGTGATAGTAAAACTATATTCATTGACAATAGAGGGTTAAATTTGCTGCTGGACATGCTTAAATCAACAAACGTAAAGCAGAAGGGTGATGCTTCAGCTGCGCTTCACAGAATAGCTGCCAAAGCCCATTCTTCTGTTGTCTCCCTTTTTGAACTTCCTCCTCGATCACCAAGTCTACAGATGTACTTGGGCGAGGAATATGTGAACAATTCAAAACTTTCTGACGTTACATTTCTAGTTGAAGGTAGAAGCTTTTATGCTCATAGAGCTTGTTTAGTTTCTTCAGACATATTTCGTGCTATGTTTGATGGCAGTTATAGGGAGAGGGAAGCAAACAATGTACTTATTCCAAATATAAAGTGGGATGTCTTTGAATTGATGATGAGATTTATATACACTGGATCGGTAGATGTCAGTGTGGATATGGCTAAGGATCTCCTCAAAGCGGCAGATCAGTATCTTCTAGACGGTCTTAAGCGTATTTGTGAATGTGCTATTGTTCAGGAAATTTCATTGGAAAATGTTGTACAACTGTACAAGATGGCTGAAGACTTCAATGCTACTTCATTAGGAAATGCATGCATACTGTTTATGTTGGAGAAATTTGATGTACTGAGTCGTGAACCATGGTATAGTACCGTGATACATCACGTTCTTCCAAACATAAGCATGTTCTTCTCAAATTTACTTGCCAAATCTCATCCAGCAGACTTGTGA 2109 0.4177 MENPHPESRCLKRKPEGDLSQDQTDSKGPCLSSKIRKKVLRQVSLLNSTASDCVTVKRVIYNLSVLAENEDLADTLIDCGVVHALVRHLQLSDAGNDDDVNRDKCYDDEVAMHEQFEVAKGCSLIIELLAIKQEHQDLIVGVGVLPCLVEFLKRHKICTISEPLVYLLKRAADAITSLAHENDDIKTRVRREGGIPPLVELLEFNDVKVQRAAARALRTLAFKNDGNKNQIVECNALPTLVLMLGSEDPKLHSEAIGVIGNLVHSSPNIKKDVLLAGALQPVICLLSSCCSESKREAALLLGQFATIDSDCKVHIAQRGAIPPLVDMLKSSDAELQEMSSFALGRLAQDSHNQAGIVQSGGIEPLLKLLDSKTTLVQQNVVFALYGLADNEDNVVCIIKADGFQRLKAANFKNQQTVECAMKALKRLEEKTQGRVLKHLIRLMCYPEEKVQRRVVIALAYLCSPRDSKTIFIDNRGLNLLLDMLKSTNVKQKGDASAALHRIAAKAHSSVVSLFELPPRSPSLQMYLGEEYVNNSKLSDVTFLVEGRSFYAHRACLVSSDIFRAMFDGSYREREANNVLIPNIKWDVFELMMRFIYTGSVDVSVDMAKDLLKAADQYLLDGLKRICECAIVQEISLENVVQLYKMAEDFNATSLGNACILFMLEKFDVLSREPWYSTVIHHVLPNISMFFSNLLAKSHPADL 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4745g00004 702 SUPERFAMILY POZ domain 529 631 IPR011333 -
Vium4745g00004 702 Gene3D Potassium Channel Kv1.1; Chain A 514 663 IPR011333 -
Vium4745g00004 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 319 361 IPR000225 GO:0005515
Vium4745g00004 702 Gene3D - 162 270 IPR011989 -
Vium4745g00004 702 ProSiteProfiles BTB domain profile. 538 604 IPR000210 GO:0005515
Vium4745g00004 702 Gene3D - 271 432 IPR011989 -
Vium4745g00004 702 Gene3D - 433 513 IPR011989 -
Vium4745g00004 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 228 IPR000225 GO:0005515
Vium4745g00004 702 Pfam Armadillo/beta-catenin-like repeat 308 346 IPR000225 GO:0005515
Vium4745g00004 702 Pfam Armadillo/beta-catenin-like repeat 183 221 IPR000225 GO:0005515
Vium4745g00004 702 Pfam Armadillo/beta-catenin-like repeat 224 263 IPR000225 GO:0005515
Vium4745g00004 702 MobiDBLite consensus disorder prediction 1 21 - -
Vium4745g00004 702 SMART BTB_4 538 634 IPR000210 GO:0005515
Vium4745g00004 702 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 697 IPR044282 -
Vium4745g00004 702 SUPERFAMILY ARM repeat 166 513 IPR016024 -
Vium4745g00004 702 Gene3D - 29 161 IPR011989 -
Vium4745g00004 702 SMART arm_5 349 389 IPR000225 GO:0005515
Vium4745g00004 702 SMART arm_5 266 306 IPR000225 GO:0005515
Vium4745g00004 702 SMART arm_5 308 348 IPR000225 GO:0005515
Vium4745g00004 702 SMART arm_5 422 463 IPR000225 GO:0005515
Vium4745g00004 702 SMART arm_5 132 180 IPR000225 GO:0005515
Vium4745g00004 702 SMART arm_5 464 504 IPR000225 GO:0005515
Vium4745g00004 702 SMART arm_5 224 264 IPR000225 GO:0005515
Vium4745g00004 702 SMART arm_5 182 222 IPR000225 GO:0005515
Vium4745g00004 702 SMART arm_5 69 131 IPR000225 GO:0005515
Vium4745g00004 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 360 402 IPR000225 GO:0005515
Vium4745g00004 702 Pfam BTB/POZ domain 530 632 IPR000210 GO:0005515
Vium4745g00004 702 MobiDBLite consensus disorder prediction 1 30 - -
Vium4745g00004 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 235 277 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4745g00004 Vium-Chr4745 39458 44804 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4745g00004 286 499 U-box Gene Family AT2G23140 25.676 5.77e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium4745g00004 BTB 5.8e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4745g00004 - - gmx:100806452 976.081