Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4744g00029 ATGCAAGGCAATAATAAACTTTTGTTGCATATATTCACTCTTTTTGTGTTTCTTGGAGCCACAAGTTCATCACCAGAAAATGGTAGCAACGGTAAACAAGTTTATATCGTCTATATGGGAGCTGCGGATTCTTCCAATGCTTCTCTTCGGAATGACCATGCTCAGCTTCTCAATGCAGTGATAAGAAGGAATGACAAGGCTTTGGTGCGGAACTACAAGCATGGTTTCTCAGGGTTCGCAGCTCGTTTATCAAAAGAGGAGGCAAATTCAATTGCTCAGAAACCTGGTGTTGTGTCTGTTTTTCCTGACCCCATTCTGAAGCTCCACACAACTCGTTCCTGGGATTTCCTAAAATATCAAACTCACGTCAAAATCGACGCCAACCCAAAAACGCTCTCCAATTCTTCTTCCTCCTCAGACGTTATCCTTGGCATATTAGACACAGGTATATGGCCAGAGGCAGCGAGTTTTAGTGAGGAGGGAATGGGTCCTGTTCCATCGCGCTGGAAAGGCACGTGCGTGAAATCATCAGACTTTAATGCATCTAATTGCAACAGGAAACTAATTGGGGCAAGATTTTACACTGACCCTAATGGGGAAGACGGTGACAACACGCCACGGGATTCGCTTGGCCACGGGACCCATGTGGCCTCCACGGCGGTGGGAGCCGCCGTGACCAACGCATCGTACTACGGTCTGGCGGCGGGGAGCGCCAAGGGTGGGTCCCCAGAATCAAGATTGGCGGTTTACAGAGTGTGTTCTAACTTTGGGTGCAGTGGGTCCGCCATTCTCGGGGCGTTTGACGATGCCATTGCCGACGGAGTCGATGTTCTGTCGCTGTCGCTCGGTGCATCACCCGGATTTCGACCCGACTTGACAAGCGACCCGATTGCGATCGGAGCGTTCCACGCCGTGGAGCGCGGCATCGTGGTGGCCTGCTCCGCTGGGAATGATGGACCGAGCTCGAACACGGTTGTGAACGATGCGCCTTGGATTTTAACCGTTGCAGCTTCGACCATCGACCGAGATTTTCAGTCCGACGTGGTCCTGGGTGGTAACAAAACCATCAAGGGAAGGGCTATAAATTTCTCCCCTCTTTCAAATTCGGCTCAGTATCCATTGGTATACGGCGAGTCTTCCAAGACGAACGAGAGTAGTTTAACTGAAGCAAGACAATGTCACCCAGATTCATTAGATGCAAGCAAAGTCAAAGGGAAGATTGTGCTATGTGATGGCAGAAATGATGAATACTCAACTAGTGAAATAATAGACACAGTGAAAACCCTGGGAGGAATAGGCCTAGTTCATATTACGGACTCAAATGGAGCAATAGCTTCATATTACGGGGACTTCCCTGCAACGGTTATTAGCTCAAAAGATGGTGCCTCAATACTGCAATACATAAATTCATCCAACAATCCAGCAGCAACAATTCTACCAACAACTACAGTTCTTGATTATAAACCTGCTCCCCTTGTGCCAGACTTTTCATCAAGAGGACCTTCATCTCTATCAAGCAATATTCTAAAGCCTGATATTGCAGCACCAGGAGTTAATATTCTGGCCGCATGGATTGAAAGTAGCTCAGACGAAGTTCCCAAAGGAAGAAAGCCCTCACAGTACAACATAATCTCAGGGACTTCAATGGCCTGTCCACATGTTTCAGGACTTGCTAGCACTGTCAAAGCACGCAACCCCAGTTGGGGTCCCTCTGCAATCAAATCTGCCATCATGACTTCAGCAATTCAAAGTGACAACACGAAGACAGCTATAACAACCGATTCAGGGTCAGTAGCCACACCTTATGACTATGGAGCAGGGGAGATGACAACATCTGAATCATTGCAGCCAGGGCTAATTTATGAAACCGACACTATCGACTACTTAAACTTCTTGTGTTACATTGGACTTGACATAGCCACGGTTAAGGTCATCTCCAGAACTGTTCCTGACAATTTCAATTGCCCCAAGGATTCAAGTTCTGATCTTGTCTCCAACATCAACTACCCTTCCATAGCAGTAAACTTCACTGGCAAAGGAACTGTCAGTGTGAGTAGGACTGTCACAAATGTTGGTGAAGAAGATGAAACAGTGTACTCCCCAGTGGTTGAGGCTCCCAGTGGAGTAAAAGTCACACTAACTCCAAATAAATTACAATTTACGAAGAGTAGTAAAAAACTAAGTTACAAAGTTATTTTCTCCACAACTTTAACTTCCCTAAAGGAAGATCTGTTTGGATCTATCACTTGGAGTAACGCCAAATATATGGTTCGAAGTCCTTTTGTATTAACTAAGTAA 2298 0.4621 MQGNNKLLLHIFTLFVFLGATSSSPENGSNGKQVYIVYMGAADSSNASLRNDHAQLLNAVIRRNDKALVRNYKHGFSGFAARLSKEEANSIAQKPGVVSVFPDPILKLHTTRSWDFLKYQTHVKIDANPKTLSNSSSSSDVILGILDTGIWPEAASFSEEGMGPVPSRWKGTCVKSSDFNASNCNRKLIGARFYTDPNGEDGDNTPRDSLGHGTHVASTAVGAAVTNASYYGLAAGSAKGGSPESRLAVYRVCSNFGCSGSAILGAFDDAIADGVDVLSLSLGASPGFRPDLTSDPIAIGAFHAVERGIVVACSAGNDGPSSNTVVNDAPWILTVAASTIDRDFQSDVVLGGNKTIKGRAINFSPLSNSAQYPLVYGESSKTNESSLTEARQCHPDSLDASKVKGKIVLCDGRNDEYSTSEIIDTVKTLGGIGLVHITDSNGAIASYYGDFPATVISSKDGASILQYINSSNNPAATILPTTTVLDYKPAPLVPDFSSRGPSSLSSNILKPDIAAPGVNILAAWIESSSDEVPKGRKPSQYNIISGTSMACPHVSGLASTVKARNPSWGPSAIKSAIMTSAIQSDNTKTAITTDSGSVATPYDYGAGEMTTSESLQPGLIYETDTIDYLNFLCYIGLDIATVKVISRTVPDNFNCPKDSSSDLVSNINYPSIAVNFTGKGTVSVSRTVTNVGEEDETVYSPVVEAPSGVKVTLTPNKLQFTKSSKKLSYKVIFSTTLTSLKEDLFGSITWSNAKYMVRSPFVLTK 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4744g00029 765 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 109 IPR037045 -
Vium4744g00029 765 PRINTS Subtilisin serine protease family (S8) signature 545 561 IPR015500 -
Vium4744g00029 765 PRINTS Subtilisin serine protease family (S8) signature 208 221 IPR015500 -
Vium4744g00029 765 PRINTS Subtilisin serine protease family (S8) signature 138 157 IPR015500 -
Vium4744g00029 765 Pfam PA domain 371 464 IPR003137 -
Vium4744g00029 765 ProSitePatterns Serine proteases, subtilase family, serine active site. 546 556 IPR023828 -
Vium4744g00029 765 FunFam subtilisin-like protease SBT1.5 341 485 - -
Vium4744g00029 765 Pfam Peptidase inhibitor I9 34 109 IPR010259 -
Vium4744g00029 765 SUPERFAMILY Subtilisin-like 72 719 IPR036852 GO:0004252|GO:0006508
Vium4744g00029 765 Gene3D - 341 485 - -
Vium4744g00029 765 FunFam Subtilisin-like protease SBT5.3 23 109 - -
Vium4744g00029 765 CDD Peptidases_S8_3 106 582 IPR034197 -
Vium4744g00029 765 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 35 762 IPR045051 -
Vium4744g00029 765 Pfam Fibronectin type-III domain 666 762 IPR041469 -
Vium4744g00029 765 ProSitePatterns Serine proteases, subtilase family, histidine active site. 212 222 IPR022398 -
Vium4744g00029 765 FunFam Subtilisin-like protease SBT1.5 140 352 - -
Vium4744g00029 765 Gene3D - 632 765 - -
Vium4744g00029 765 CDD PA_subtilisin_like 347 478 - -
Vium4744g00029 765 Gene3D Peptidase S8/S53 domain 140 628 IPR036852 GO:0004252|GO:0006508
Vium4744g00029 765 Pfam Subtilase family 138 607 IPR000209 GO:0006508|GO:0008236
Vium4744g00029 765 ProSiteProfiles Serine proteases, subtilase domain profile. 113 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4744g00029 Vium-Chr4744 211255 214619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4744g00029 35 764 Subtilisin-like Serine Gene Family AT1G20150 53.629 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4744g00029 K25898 - gmx:100820194 1297.72