Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4744g00024 ATGGATTCTTCTTTAATTCCTTCTTCACTTCTGCTCCGTCGGATGTTACTGTTGTTGATGACGGTCTTTTGCAAAACCAAAGGAGCATTGCAACTTCCACCAAATTTGAAGGTTCCTGCAGTGTTGGTGTTCGGAGATTCGATAATGGACACCGGCAACAACAACAACAACACGCATACGCTTGCAAAGTGCAATTTCCCTCCCTATGGTAGAGACTTCCAAGGAGCCATTCCGACGGGTCGATTCGGTAACGGAAAAGTTCCTTCCGATCTTATAGCTGAAGAACTAGGAATTAAGGATCTTCTACCGGCATATTTCGATCCAAATCTCCAACCTAATGATCTCCTCACCGGTGTCTGTTTTGCATCTGGTGGTTCAGGCTACGATCCTCTCACATCTAAAATGGCGACAGCTATATCATTGTCTGGTCAAATAGACATGTTCAAAGACTACATAAGAAAGCTTGAAGGACTTGTCGGGGAGGACAGAACCAACTTCATCCTAGCCAATAGCATTGTCCTTGTGGTGGAAGGCAGCAACGACATTTCCAACACTTACTTTCTGAGTCATGCTAGAGAAGTGCAATATGATATTCCTACTTACACTGACCTAATGGTTAGCTCAGCTTCTAGTTTCTTAAAGGAAATATATCAATTAGGTGCTCGGAGGATAGGAGTATTCAGTGCGCCACCAATTGGATGTGTGCCATTTCAGAGAACGATTTTGGGAGGATTGCTCAGAAAATGTGCAGAAAAGTATAACGAAGCGGCCAAGTTATTCAACAGCAAACTGGCTAAGGAGTTGGCTTCTCTTAACCAGAATTTGCCTAATGCCAGGGTGGTTTACCTTGATGTTTACAACCCTCTACTTGATATCATTGTAAATTACCAAAATTATGGTTTTAAAGTGGGAGACAGAGGATGTTGTGGTACGGGCAAAATAGAGACTGCAGTGTTCTGCAACTCTTTGGACCCCACGTGCCAGAATGCGGGAGACTACGTTTTTTGGGATGGTTTTCATCCTTCTGAAAGTGTTTACAGAAAGCTCGTACCTCCTATTCTCCATAAATATATGTACCAGTTCATCTGA 1089 0.4307 MDSSLIPSSLLLRRMLLLLMTVFCKTKGALQLPPNLKVPAVLVFGDSIMDTGNNNNNTHTLAKCNFPPYGRDFQGAIPTGRFGNGKVPSDLIAEELGIKDLLPAYFDPNLQPNDLLTGVCFASGGSGYDPLTSKMATAISLSGQIDMFKDYIRKLEGLVGEDRTNFILANSIVLVVEGSNDISNTYFLSHAREVQYDIPTYTDLMVSSASSFLKEIYQLGARRIGVFSAPPIGCVPFQRTILGGLLRKCAEKYNEAAKLFNSKLAKELASLNQNLPNARVVYLDVYNPLLDIIVNYQNYGFKVGDRGCCGTGKIETAVFCNSLDPTCQNAGDYVFWDGFHPSESVYRKLVPPILHKYMYQFI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4744g00024 362 Gene3D SGNH hydrolase 32 357 IPR036514 -
Vium4744g00024 362 SUPERFAMILY SGNH hydrolase 40 355 - -
Vium4744g00024 362 PANTHER GDSL ESTERASE/LIPASE EXL3 20 350 - -
Vium4744g00024 362 FunFam GDSL esterase/lipase APG 30 358 - -
Vium4744g00024 362 CDD SGNH_plant_lipase_like 39 357 IPR035669 -
Vium4744g00024 362 Pfam GDSL-like Lipase/Acylhydrolase 41 349 IPR001087 GO:0016788
Vium4744g00024 362 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 41 52 IPR008265 GO:0006629|GO:0016298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4744g00024 Vium-Chr4744 152911 158869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4744g00024 35 355 Pollen Coat Proteome AT1G75910 42.284 1.11e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4744g00024 - - gmx:100793604 619.772