Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4744g00012 ATGACTCTTGAAGACTTCTTTACCTTGACCGAGATGAAAGATGGGCTCACAGCACCTTCTCGTGTGCAGGAGCTGGTCTCTGTGATGCAGAAAGAAAAAAGTTGCGATGTTAAAAATTCTGCTGATGCGACTAGGCAGTGGGCTGCTGTTGCAAGCACTATTACCGCTACAGAGAATAAAGATTGCCTTGATCTTTTTATTCAATTGGATGGACTTTGCTTCATCAACGGATGGTTAAAGGATGCCCAAAATTTTGAGGTTGATGCAAAAGACAGTTTTGTTGAAGAATCAATTACTGCAATGTTACGTGCAGTTGAAAAGCTTCATCTAGACTTTGAGATGTCAATTTCATCTGGAATTCGCATCACTGTAAGTAATCTTATTGGCCATCATAGTGCTAAGGTTCAGGATAGAGCAATGGCATTGTTTGACAGCTGGAAGAGAGCTGAAAATGTTGATACTGAATCTTATGATGTGGAGCTTGCTAAGGTTGATTGTGCAACCAATGAGATTGTCAAGGAGGAAAGCCAGCCATCTGCTGTGGATGAAGCTGGCAATGATAATGATAATGCATCAGGACTAAATGGAACTGTAAATTGTCTATCGAAAAGCTCAGATAATTTGCTTGTACATAGTTCTGATAATGTGTGTCACTCATCCTCCAGTTTGCAATGTGATGGTATCAAAGAAGGATCAGTAAACCATGGTGCTGGTGTTCCATCTTCTGCTCAAGTACCACTGCCTTTATGCCCTGCAGATGTGATCACTTCGGTTGAAGGACAGTCAGATATGGTTCAGTTAATTGAGTTGGCTAAACTGGAAAAGCAGGAGCAAAACGTTAATGTCCCTCCAGAAAAACTTGGAGCACCGGAGATCTGTTCTGTGTCCGCTGAGCCAGAGCCCGAGTCTGTTTCCGTTGTTTCCTGTGAAGTAAAAGCACCAGAATCTGTTAAAGAACCAGCTTTGGAGCAAAATGTTGAACACAATGAGGATGATGTTTGTCATAACTTGCCTATTTCTACTAGTATGAAGACGCCTGCATCTGATAGGAACAGTGGGGAAGATGATGTTAGAACTGTAACTGGCTCTTCACAAGTTTCCAGAGCTGCAGAGAATGATAATGACTGCTCTAATGCCTTACAAGATACATCAGTCAGTGACAGTAAATTGGGAAAGACTGAGGTGTCAGATATGTCTGTCTGTGGAGCCGGATATGTCACTCCATCAAAGGAAGGAAAGCGTCATGTTGATAACAACAAAGAAGTTACATCTGTTGGTTCTGATTCTTGTAAACCTGAAATAGATTTCAGAAGGTCTAACATAGTTGACAAGAGAGTTTCTGGCAATGAACTTGACTGTGGCATTGTCGATCCTTTAGAATTTGCTCGACAAGTTGCTCAGGAAGTTAATAGAGAAGTCAGCAGTTCTTCCGAAAAATTCTCATATGGCAGAATCAGGCAACCAGGCAGTCCAGATTCTGTAAGAAAAGAGGATGAGCTCCCTCCTGTCCCACCTGAGGAGGTTTCCTCCAGACACAGCCTTGCTACTGAGGCATGTTCAATGGAGGGGCGTGCAAGTATTCCTGACAATAGTGTGGCGGAGCCTGAATGCAGACCTGATGTGGTGTGCTTGGAGGTGACTGAAACAGCTCAAGATTCAGGTGGTAATTCAGAGAAACAACCTTGGGGCTTTGATCTCAACGAAGTTGGTTCTGACGATATGGATGTTTGTGTAAATACTACATCTACCCCCATTCCTGTTGTCTCTGCTTCAAGGCCTACGCCAACTCCTGGGTTGCCTGGTGTCCCTTTGCAGTTTGAGGGAACACTTGGTTGGAAAGGATCAGCTGCCACCAGTGCCTTTCGCCCTGCATCTCCTCGTAAATATTGTGATAATGAGAGGAATCTTTCGGATACGAACATTGACACTTCAAGGCCGAGGCAGGACTGGCTTGATATTGATCTAAACGTTGCTGAGGGTGAAGAAGGAAATGCAAAACCTATTGCCGAATCTTCAGGCTGGCGTTCTGAGCAATCCACTGTTGAATTTAGTTCTAAAAGTTCAAGCATGCTTGGATTTGATTTGAACAGTACTGGTGATGACGGCCACGTCCAACCTTCAGATCACAGGATGGAGGGACAACTCTTTCTTGGAAGAAATGGCTATTGGAGCCCATCACCTACATCGTCATCATCATCAATGCAGCCTTATGTTAGAAACATTGATTTGAATGACAGGCCATGCCTTCAAACTGATTTGGTAGACCTGGGGTCCTGTAAGTCTTCTCATATAACCAATGGATATGATTGTTCTAAATCACCAGATGCTCCTGTTATCTCTCTTTTGGGCGCCAAGGTAGAAGTTGGTAAAAAAGAACGTGTTCCTCAATCCTTTTTGCCAAATGGAAATGCTGTTGAACCTGCAATAGATCTTACGATGTCAAGGACCGGTGGCACTATAGGGATGGCTCCTGCTGCCTCCTTCAATCAGTCATCTGTTTTTGGGTATAATGGAGTGACATCAGCATCAGCAGCACCCACAATGCCTTTTTCATCAGCCATGTACGGGTCAGGTGGCACAGTTCCATATATGGTTGACTCAAGAGGAGCTCCAGCTGTCCCTCAAGTGGGTGGACCTTCATTAAATATACTTTCATCATCTTACTCTCAGCCACCACCGTTCTTTATGAACGTGACGGGTACACAACTCGGTTTGAATGGATTTGGGCCTTCACGTCCTAATTTTGACCTGAACTCTGGGTTCATGATTGAGGGTGGGAATAGAGAGACATTTGCAGCCAGGCAGTTTTCCTTTCCTGGTCAGGGAAGGGCTGTGGAGGAGCAAGTAAGAACCATGCCGCAGCCGTCAAGTTCGGTGGTTGGTGGGAAACGAAAGGAACCAGATAGCAGTTGGGAACCCTACCCATATAGCTACAAACATTCGCAACCTCCATGGAAGTAG 2961 0.4441 MTLEDFFTLTEMKDGLTAPSRVQELVSVMQKEKSCDVKNSADATRQWAAVASTITATENKDCLDLFIQLDGLCFINGWLKDAQNFEVDAKDSFVEESITAMLRAVEKLHLDFEMSISSGIRITVSNLIGHHSAKVQDRAMALFDSWKRAENVDTESYDVELAKVDCATNEIVKEESQPSAVDEAGNDNDNASGLNGTVNCLSKSSDNLLVHSSDNVCHSSSSLQCDGIKEGSVNHGAGVPSSAQVPLPLCPADVITSVEGQSDMVQLIELAKLEKQEQNVNVPPEKLGAPEICSVSAEPEPESVSVVSCEVKAPESVKEPALEQNVEHNEDDVCHNLPISTSMKTPASDRNSGEDDVRTVTGSSQVSRAAENDNDCSNALQDTSVSDSKLGKTEVSDMSVCGAGYVTPSKEGKRHVDNNKEVTSVGSDSCKPEIDFRRSNIVDKRVSGNELDCGIVDPLEFARQVAQEVNREVSSSSEKFSYGRIRQPGSPDSVRKEDELPPVPPEEVSSRHSLATEACSMEGRASIPDNSVAEPECRPDVVCLEVTETAQDSGGNSEKQPWGFDLNEVGSDDMDVCVNTTSTPIPVVSASRPTPTPGLPGVPLQFEGTLGWKGSAATSAFRPASPRKYCDNERNLSDTNIDTSRPRQDWLDIDLNVAEGEEGNAKPIAESSGWRSEQSTVEFSSKSSSMLGFDLNSTGDDGHVQPSDHRMEGQLFLGRNGYWSPSPTSSSSSMQPYVRNIDLNDRPCLQTDLVDLGSCKSSHITNGYDCSKSPDAPVISLLGAKVEVGKKERVPQSFLPNGNAVEPAIDLTMSRTGGTIGMAPAASFNQSSVFGYNGVTSASAAPTMPFSSAMYGSGGTVPYMVDSRGAPAVPQVGGPSLNILSSSYSQPPPFFMNVTGTQLGLNGFGPSRPNFDLNSGFMIEGGNRETFAARQFSFPGQGRAVEEQVRTMPQPSSSVVGGKRKEPDSSWEPYPYSYKHSQPPWK 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4744g00012 986 MobiDBLite consensus disorder prediction 472 512 - -
Vium4744g00012 986 MobiDBLite consensus disorder prediction 944 986 - -
Vium4744g00012 986 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 151 IPR035441 -
Vium4744g00012 986 MobiDBLite consensus disorder prediction 490 505 - -
Vium4744g00012 986 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 986 - -
Vium4744g00012 986 MobiDBLite consensus disorder prediction 357 383 - -
Vium4744g00012 986 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 151 IPR035441 -
Vium4744g00012 986 MobiDBLite consensus disorder prediction 336 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4744g00012 Vium-Chr4744 83225 88635 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vium4744g00012 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4744g00012 - - gmx:102669997 1397.88