Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4737g00002 ATGGATAAGTACGAGGCTGTTAAGGAATTGGGGGCAGGCAATTTTGTGGTGGCCAGGCTTATGAGGAACAGGGTCACCAAGGAGCTCGTAGCCATGAAATACATCGAGCGTGGCCCAAAGATTGATGAGAATGTGGCAAGGGAGATTATGAACCACAGGTCCCTTCGGCATCCCAATATAATTCGTTACAAGGAGGTGGTTTTGACTCCCACACATTTGGCAATTGTGATGGAGTATGCAGCAGGAGGAGAGCTCTTTGAGAGGATATGCAGTGCTGGCAGGTTCAGTGAAGACGAGGCTAGATATTTCTTTCAGCAGCTGATCTCTGGTGTCCATTTCTGTCATACAATGCAAATATGCCACCGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCTGCTCCTCGGTTAAAAATTTGTGACTTCGGTTACTCCAAGTCATCTTTGCTGCATTCCCGACCCAAATCAACAGTTGGAACACCTGCTTATATAGCACCGGAAGTTCTTTCAAGGCGAGAGTACGATGGAAAGTTGGCTGATGTATGGTCGTGTGGAGTGACTCTTTATGTCATGCTGGTTGGAGCATACCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTGTTCAATACAAAATCCCTGACTATGTTCACATATCTCAAGATTGTAGACAACTTCTCTCTCGTATATTTGTTGCAAATCCATTGAGGAGAATTACTATTAAGGAAATTAAGAATCACCCATGGTTTTTGAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTATTTATTACCAGAGGGACAGTCCAAACTTTCACCTTCAAAGTGTGGACGAGATAATGAAAATTGTGGGAGAGGCAAGAAATCCACCTCCAGTATCTAGGCTGGTCAAAGGTTTTGGTTGGGAAGGTGAAGAAGATTTGGATGAAGAAGTGGAGGAAGAGGAGGATGAAGAAGATGAGTATGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGGGAATTCCAAATTAGTTAA 1053 0.4349 MDKYEAVKELGAGNFVVARLMRNRVTKELVAMKYIERGPKIDENVAREIMNHRSLRHPNIIRYKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVHFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRQLLSRIFVANPLRRITIKEIKNHPWFLKNLPRELTESAQAIYYQRDSPNFHLQSVDEIMKIVGEARNPPPVSRLVKGFGWEGEEDLDEEVEEEEDEEDEYDKRVKEVHASGEFQIS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4737g00002 350 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4737g00002 350 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4737g00002 350 PANTHER SERINE/THREONINE KINASE 3 300 - -
Vium4737g00002 350 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vium4737g00002 350 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Vium4737g00002 350 MobiDBLite consensus disorder prediction 316 334 - -
Vium4737g00002 350 Coils Coil 317 344 - -
Vium4737g00002 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vium4737g00002 350 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Vium4737g00002 350 SUPERFAMILY Protein kinase-like (PK-like) 2 294 IPR011009 -
Vium4737g00002 350 CDD STKc_SnRK2 3 259 - -
Vium4737g00002 350 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4737g00002 350 MobiDBLite consensus disorder prediction 314 350 - -
Vium4737g00002 350 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4737g00002 Vium-Chr4737 14853 18177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4737g00002 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 42.593 5.48e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vium4737g00002 Pkinase 8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4737g00002 K14498 - gmx:547811 656.751