Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4730g00001 ATGTTTCTCTCTGCTTTTCTCTCTTCATTTATACACGTCTTGTCACCCAACCCTTTTGTTTTTCCCTTCGTCCTCTTCTTCTATACAATTAATATTATTGCAGTCTCCTTTATTACTTGCTTCCAACTCTGTTCATTTGTTTACCTTTCTGCATTTTCTGCATCTCTCTATGTTGTTAGTATTACTGTAATACTAACATTTACTACTCACAAGAGACCAAAACGGGAACACAGTACCATTCATTCCTCTGCTTATTTATTACAACTATCTCCAACGCACCACCAACAACACCAACGCATGGCTGCACCTTCTTCTTCAAATTGGGTCATGGAAACTGCTCACGATGTTCCTCATGTTTTGGCCGTCGACGACAACCTTATTGATCGAAAACTCGTTGAGAAACTCCTCAGGAATTCCTCTTGCAAAGTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAGTTATTGGGCTTGACAAGTGGTGGACAGAACAGCATGAACGGTAGATCCAAAGTAAATTTGGTAATCACAGACTATTGCATGCCAGGAATGACAGGCTATGAGCTACTTAAGAAAATTAAGGAATCATCTGTAATGAAGGAGGTTCCTGTAGTGATAATGTCTTCTGAGAACATACCGACACGGATTAACAAGTGTCTGGAAGAAGGAGCTCAGATGTTCATCTTAAAGCCCCTCAAACAATCTGATGTAAAGAAACTGACATGTCAGTTAATGAATTGA 741 0.3995 MFLSAFLSSFIHVLSPNPFVFPFVLFFYTINIIAVSFITCFQLCSFVYLSAFSASLYVVSITVILTFTTHKRPKREHSTIHSSAYLLQLSPTHHQQHQRMAAPSSSNWVMETAHDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSGGQNSMNGRSKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDVKKLTCQLMN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4730g00001 246 CDD REC_typeA_ARR 119 240 - -
Vium4730g00001 246 SUPERFAMILY CheY-like 117 244 IPR011006 -
Vium4730g00001 246 ProSiteProfiles Response regulatory domain profile. 118 245 IPR001789 GO:0000160
Vium4730g00001 246 PANTHER TWO-COMPONENT RESPONSE REGULATOR 117 244 IPR045279 GO:0009736
Vium4730g00001 246 Gene3D - 118 246 - -
Vium4730g00001 246 SMART REC_2 117 241 IPR001789 GO:0000160
Vium4730g00001 246 Pfam Response regulator receiver domain 119 239 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4730g00001 Vium-Chr4730 16244 18351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4730g00001 101 246 Response Regulator Gene Family AT3G56380 67.568 3.28e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium4730g00001 Response_reg 9.1e-22 CL0304