Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium4728g00007 | ATGAGCTTCTCCAAGGGTTATCCTGGCAGCCAGACGCCGGGTGATATTGAGGCCGGGTCTCCCACTGGCTGCTCTGATGATTTTGATGACGGAGACTTTTCTGCTGATCCATTTGATGTTACCAGAACAAAGAATGCTCCGGTTCAACGCCTCAGGCGCTGGCGGCAAGCGGCACTGGTGCTCAATGCTTCTCGCCGATTTCGATACACCTTGGACTTAAAGAAAGAAGAAGAAAAGAAGAGAGTATTAAGAATTGTTATAGTGCATACACGGGCCATTCAAGCTGCATATCGATTCAAGGAAGCTGGGCAATTGAATGGACTTGGAACTATAAAACCTCATTTGAACTCCACTGGAGAATTTTCAATTGGACAAGAACAACTTTCTTCAATTTCAAGGGACCGAGACACTACTACTCTGCGGGAATGTGAAGGGGTTGTAGGGTTATCAAATTTATTGAAAAGCAATTTAGAGAAGGGAATTCGAGGTGATGATGCTGACTTGTTAATACGGAGGAATGCATTTGGTTCCAACAACTACCCTCGAAAGTCTGGAAGAAATTTTTTGTCGTTTATGTGGGATGCTTGCAAGGATTTGACCTTGATTATTCTAATGGTAGCTGCAATGGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATCCAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGATCTAAATGAGCACAAGAGAAACATTCATTTGGAGGTCATTCGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTAACCAGGTCCCCGCTGATGGAGTTTTGATCTCTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACAGGGGAGAGCAAAATTGTCGAAAAAAATTCTAACGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAATGGAACTATGCTGGTAACGGCTGTTGGTATTAATACTGAATGGGGGCTTCTGATGGCTAGCATTTCAGAAGACAATGGTGAAGAAACACCTTTGCAGGTACGCTTAAATGGTCTCGCTACCTTAATTGGTATTGTTGGACTCTCTGTGGCTGTTATCGTTCTGATAGTACTACTGGCCAGGTATTTCTCTGGGCATACTAGAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAAACCAAAGTTGGTGATGCTATTGATGGAGTGATCAAGATATTCACTGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGTTGCCTTTAGCCGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCGGATAAAGCTTTGGTGAGGAGGCTCTCTGCCTGTGAGACAATGGGGTCGGCCACAACCATCTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGATAACTCCTGATCATACACCAGACCAGTTGTCTGGTATGCTACGCTCTTTGCTGTTTGAAGGTGTTGTGCAGAACACTAATGGAAGTGTTTATGTCCCTGAGAGTGGTAATGGTATTGAGATTTCTGGATCACCAACAGAAAGGGCAATTTTAGAGTGGGGAATTAAGCTTGGGATGCATTTTGATGATGTCAGATCACAATCATCAGTTGTCCATGTCTTCCCCTTTAATTCAGACAAAAAGCGAGGAGGAGTTGCAATACAGATGACCACTCCGCAGACAGACTCTGAAATCCATATACATTGGAAAGGTGCGGCTGAGATAGTCCTTGGATGCTGTACAGGGTATATTGATGTTAATAATCAACTGGTGGAGATGGATGAAGAGAAGATGTCATATTTTAAAAAGGTTATTGAACGTATGGCTGCTGATAGTCTACGGTGTATTGCGATTGCATTTAGATCATTTGAAAGGGAGAATGTTCCAACTGGTGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTTTTTTTATTGGCTATTATTGGCCTGAAGGATCCTTGTCGACCTGGGGTCAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTCAAAACTGCAAAAGCAATAGCTGTGGAATGTGGAATTCTTGATTCAATCTCTGAAGCTACAGAGCCAATCATCATTGAAGGAAAAAGATTTCGTGCCTTGACAGATGAAGGGAGAGCACAAATTGTTGACAGCATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAACGGGCATGTTGTGGCTGTAACTGGAGATGGAACAAATGATGCTCCTGCACTACACGAGGCCGATATTGGTCTTTCAATGGGTATACAAGGAACAGAAGTTGCTAAAGAGAGCTCCGATATTATTATTTTGGATGACAATTTTGCTTCGGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCTGCACTTGCTATAAATGTTGTTGCTGCATTTTCCACAGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTGGCCTTGGCAACTGAACCACCAACTGATTCCCTAATGGGTCAGCTTCCAATGGGAAGACGTGAACCGCTTGTATCAAATTTTATGTGGAGGAATCTGTTGATACAGGCAATTTATCAAGTTTCTGTGTTGCTTATACTTAATTTCCAAGGTGTGAAATTACTGGGTTTGAGGAATGAACCCAACCGCCCTGCAATCAAAGTGAAGAACTCTCTGATATTCAATGCTTTTGTTTTTTGTCAAGTCTTTAATGAATTTAATGCCCGAAAGCCATATAGCTTCAACATTTTCAAGGGAGTCACGAGAAACTACCTCTTTATGGGGATAGTGTTAATAACTGTTGTGCTCCAGATTGTCATCATTGAATTTCTTGGAAAGTTCACTAAAACAGTCAAGCTTAATTGGAAGCTGTGGCTCATTTCTGTTATTATAGCATTTATCAGCTGGCCCCTTGCTGTGGTTGGGAAGCTGATACCAGTACCGAAAGCTCAACTCAGTAACGGTGTTCGAACATTCTTTGAAAAATTTAAGACGACGGAATCTGAGGCCTCTCATCGGAGATAA | 3264 | 0.4222 | MSFSKGYPGSQTPGDIEAGSPTGCSDDFDDGDFSADPFDVTRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEEKKRVLRIVIVHTRAIQAAYRFKEAGQLNGLGTIKPHLNSTGEFSIGQEQLSSISRDRDTTTLRECEGVVGLSNLLKSNLEKGIRGDDADLLIRRNAFGSNNYPRKSGRNFLSFMWDACKDLTLIILMVAAMASLALGIKSEGIQEGWYDGGSIAFAVILVILVTAISDYKQSLQFQDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLISGHSLAIDESSMTGESKIVEKNSNDPFLISGCKVADGNGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGLATLIGIVGLSVAVIVLIVLLARYFSGHTRNPDGSVQFIAGKTKVGDAIDGVIKIFTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKITPDHTPDQLSGMLRSLLFEGVVQNTNGSVYVPESGNGIEISGSPTERAILEWGIKLGMHFDDVRSQSSVVHVFPFNSDKKRGGVAIQMTTPQTDSEIHIHWKGAAEIVLGCCTGYIDVNNQLVEMDEEKMSYFKKVIERMAADSLRCIAIAFRSFERENVPTGEELAHWSLPEDDLFLLAIIGLKDPCRPGVKDAVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILDSISEATEPIIIEGKRFRALTDEGRAQIVDSILVMGRSSPNDKLLLVQALRRNGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMGQLPMGRREPLVSNFMWRNLLIQAIYQVSVLLILNFQGVKLLGLRNEPNRPAIKVKNSLIFNAFVFCQVFNEFNARKPYSFNIFKGVTRNYLFMGIVLITVVLQIVIIEFLGKFTKTVKLNWKLWLISVIIAFISWPLAVVGKLIPVPKAQLSNGVRTFFEKFKTTESEASHRR | 1087 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium4728g00007 | 1087 | Gene3D | - | 194 | 1050 | - | - | |
| Vium4728g00007 | 1087 | Pfam | Cation transporter/ATPase, N-terminus | 148 | 210 | IPR004014 | - | |
| Vium4728g00007 | 1087 | Pfam | Cation transporting ATPase, C-terminus | 881 | 1058 | IPR006068 | - | |
| Vium4728g00007 | 1087 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 137 | 1060 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Vium4728g00007 | 1087 | FunFam | Calcium-transporting ATPase | 241 | 362 | - | - | |
| Vium4728g00007 | 1087 | Pfam | E1-E2 ATPase | 264 | 464 | - | - | |
| Vium4728g00007 | 1087 | CDD | P-type_ATPase_Ca_PMCA-like | 171 | 929 | - | - | |
| Vium4728g00007 | 1087 | PRINTS | H+-transporting ATPase (proton pump) signature | 796 | 812 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vium4728g00007 | 1087 | PRINTS | H+-transporting ATPase (proton pump) signature | 828 | 853 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vium4728g00007 | 1087 | PRINTS | H+-transporting ATPase (proton pump) signature | 642 | 660 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vium4728g00007 | 1087 | FunFam | Calcium-transporting ATPase | 46 | 102 | - | - | |
| Vium4728g00007 | 1087 | NCBIfam | HAD-IC family P-type ATPase | 231 | 402 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vium4728g00007 | 1087 | NCBIfam | HAD-IC family P-type ATPase | 426 | 510 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vium4728g00007 | 1087 | NCBIfam | HAD-IC family P-type ATPase | 763 | 876 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vium4728g00007 | 1087 | Gene3D | - | 47 | 102 | - | - | |
| Vium4728g00007 | 1087 | SUPERFAMILY | Calcium ATPase, transduction domain A | 264 | 359 | IPR008250 | - | |
| Vium4728g00007 | 1087 | PRINTS | P-type cation-transporting ATPase superfamily signature | 796 | 815 | - | - | |
| Vium4728g00007 | 1087 | PRINTS | P-type cation-transporting ATPase superfamily signature | 689 | 700 | - | - | |
| Vium4728g00007 | 1087 | PRINTS | P-type cation-transporting ATPase superfamily signature | 310 | 324 | - | - | |
| Vium4728g00007 | 1087 | PRINTS | P-type cation-transporting ATPase superfamily signature | 820 | 832 | - | - | |
| Vium4728g00007 | 1087 | PRINTS | P-type cation-transporting ATPase superfamily signature | 486 | 500 | - | - | |
| Vium4728g00007 | 1087 | PRINTS | P-type cation-transporting ATPase superfamily signature | 711 | 721 | - | - | |
| Vium4728g00007 | 1087 | Pfam | Cation transport ATPase (P-type) | 543 | 622 | - | - | |
| Vium4728g00007 | 1087 | FunFam | Calcium-transporting ATPase | 813 | 1062 | - | - | |
| Vium4728g00007 | 1087 | Pfam | haloacid dehalogenase-like hydrolase | 685 | 810 | - | - | |
| Vium4728g00007 | 1087 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Vium4728g00007 | 1087 | SFLD | p-type atpase | 468 | 848 | IPR044492 | - | |
| Vium4728g00007 | 1087 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 340 | 510 | - | - | |
| Vium4728g00007 | 1087 | Gene3D | - | 170 | 362 | - | - | |
| Vium4728g00007 | 1087 | FunFam | Calcium-transporting ATPase | 496 | 696 | - | - | |
| Vium4728g00007 | 1087 | FunFam | Calcium-transporting ATPase | 194 | 251 | - | - | |
| Vium4728g00007 | 1087 | FunFam | Calcium-transporting ATPase | 690 | 841 | - | - | |
| Vium4728g00007 | 1087 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 488 | 494 | IPR018303 | - | |
| Vium4728g00007 | 1087 | Gene3D | - | 483 | 841 | IPR023214 | - | |
| Vium4728g00007 | 1087 | Gene3D | - | 496 | 696 | IPR023299 | GO:0000166 | |
| Vium4728g00007 | 1087 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 493 | 693 | IPR023299 | GO:0000166 | |
| Vium4728g00007 | 1087 | SFLD | Haloacid Dehalogenase | 468 | 848 | - | - | |
| Vium4728g00007 | 1087 | SMART | Cation_ATPase_N_a_2 | 145 | 216 | IPR004014 | - | |
| Vium4728g00007 | 1087 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 35 | 78 | IPR024750 | GO:0005516 | |
| Vium4728g00007 | 1087 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 148 | 1060 | IPR023298 | - | |
| Vium4728g00007 | 1087 | PANTHER | CATION TRANSPORTING ATPASE | 110 | 1060 | - | - | |
| Vium4728g00007 | 1087 | SUPERFAMILY | HAD-like | 484 | 901 | IPR036412 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium4728g00007 | Vium-Chr4728 | 33903 | 54200 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium4728g00007 | 2 | 1084 | Primary Pumps ATPases | AT5G57110 | 68.785 | 0.0 | 1506 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium4728g00007 | K01537 | - | gmx:100790157 | 1778.07 |