Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4728g00007 ATGAGCTTCTCCAAGGGTTATCCTGGCAGCCAGACGCCGGGTGATATTGAGGCCGGGTCTCCCACTGGCTGCTCTGATGATTTTGATGACGGAGACTTTTCTGCTGATCCATTTGATGTTACCAGAACAAAGAATGCTCCGGTTCAACGCCTCAGGCGCTGGCGGCAAGCGGCACTGGTGCTCAATGCTTCTCGCCGATTTCGATACACCTTGGACTTAAAGAAAGAAGAAGAAAAGAAGAGAGTATTAAGAATTGTTATAGTGCATACACGGGCCATTCAAGCTGCATATCGATTCAAGGAAGCTGGGCAATTGAATGGACTTGGAACTATAAAACCTCATTTGAACTCCACTGGAGAATTTTCAATTGGACAAGAACAACTTTCTTCAATTTCAAGGGACCGAGACACTACTACTCTGCGGGAATGTGAAGGGGTTGTAGGGTTATCAAATTTATTGAAAAGCAATTTAGAGAAGGGAATTCGAGGTGATGATGCTGACTTGTTAATACGGAGGAATGCATTTGGTTCCAACAACTACCCTCGAAAGTCTGGAAGAAATTTTTTGTCGTTTATGTGGGATGCTTGCAAGGATTTGACCTTGATTATTCTAATGGTAGCTGCAATGGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATCCAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGATCTAAATGAGCACAAGAGAAACATTCATTTGGAGGTCATTCGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTAACCAGGTCCCCGCTGATGGAGTTTTGATCTCTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACAGGGGAGAGCAAAATTGTCGAAAAAAATTCTAACGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAATGGAACTATGCTGGTAACGGCTGTTGGTATTAATACTGAATGGGGGCTTCTGATGGCTAGCATTTCAGAAGACAATGGTGAAGAAACACCTTTGCAGGTACGCTTAAATGGTCTCGCTACCTTAATTGGTATTGTTGGACTCTCTGTGGCTGTTATCGTTCTGATAGTACTACTGGCCAGGTATTTCTCTGGGCATACTAGAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAAACCAAAGTTGGTGATGCTATTGATGGAGTGATCAAGATATTCACTGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGTTGCCTTTAGCCGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCGGATAAAGCTTTGGTGAGGAGGCTCTCTGCCTGTGAGACAATGGGGTCGGCCACAACCATCTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGATAACTCCTGATCATACACCAGACCAGTTGTCTGGTATGCTACGCTCTTTGCTGTTTGAAGGTGTTGTGCAGAACACTAATGGAAGTGTTTATGTCCCTGAGAGTGGTAATGGTATTGAGATTTCTGGATCACCAACAGAAAGGGCAATTTTAGAGTGGGGAATTAAGCTTGGGATGCATTTTGATGATGTCAGATCACAATCATCAGTTGTCCATGTCTTCCCCTTTAATTCAGACAAAAAGCGAGGAGGAGTTGCAATACAGATGACCACTCCGCAGACAGACTCTGAAATCCATATACATTGGAAAGGTGCGGCTGAGATAGTCCTTGGATGCTGTACAGGGTATATTGATGTTAATAATCAACTGGTGGAGATGGATGAAGAGAAGATGTCATATTTTAAAAAGGTTATTGAACGTATGGCTGCTGATAGTCTACGGTGTATTGCGATTGCATTTAGATCATTTGAAAGGGAGAATGTTCCAACTGGTGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTTTTTTTATTGGCTATTATTGGCCTGAAGGATCCTTGTCGACCTGGGGTCAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTCAAAACTGCAAAAGCAATAGCTGTGGAATGTGGAATTCTTGATTCAATCTCTGAAGCTACAGAGCCAATCATCATTGAAGGAAAAAGATTTCGTGCCTTGACAGATGAAGGGAGAGCACAAATTGTTGACAGCATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAACGGGCATGTTGTGGCTGTAACTGGAGATGGAACAAATGATGCTCCTGCACTACACGAGGCCGATATTGGTCTTTCAATGGGTATACAAGGAACAGAAGTTGCTAAAGAGAGCTCCGATATTATTATTTTGGATGACAATTTTGCTTCGGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCTGCACTTGCTATAAATGTTGTTGCTGCATTTTCCACAGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTGGCCTTGGCAACTGAACCACCAACTGATTCCCTAATGGGTCAGCTTCCAATGGGAAGACGTGAACCGCTTGTATCAAATTTTATGTGGAGGAATCTGTTGATACAGGCAATTTATCAAGTTTCTGTGTTGCTTATACTTAATTTCCAAGGTGTGAAATTACTGGGTTTGAGGAATGAACCCAACCGCCCTGCAATCAAAGTGAAGAACTCTCTGATATTCAATGCTTTTGTTTTTTGTCAAGTCTTTAATGAATTTAATGCCCGAAAGCCATATAGCTTCAACATTTTCAAGGGAGTCACGAGAAACTACCTCTTTATGGGGATAGTGTTAATAACTGTTGTGCTCCAGATTGTCATCATTGAATTTCTTGGAAAGTTCACTAAAACAGTCAAGCTTAATTGGAAGCTGTGGCTCATTTCTGTTATTATAGCATTTATCAGCTGGCCCCTTGCTGTGGTTGGGAAGCTGATACCAGTACCGAAAGCTCAACTCAGTAACGGTGTTCGAACATTCTTTGAAAAATTTAAGACGACGGAATCTGAGGCCTCTCATCGGAGATAA 3264 0.4222 MSFSKGYPGSQTPGDIEAGSPTGCSDDFDDGDFSADPFDVTRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEEKKRVLRIVIVHTRAIQAAYRFKEAGQLNGLGTIKPHLNSTGEFSIGQEQLSSISRDRDTTTLRECEGVVGLSNLLKSNLEKGIRGDDADLLIRRNAFGSNNYPRKSGRNFLSFMWDACKDLTLIILMVAAMASLALGIKSEGIQEGWYDGGSIAFAVILVILVTAISDYKQSLQFQDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLISGHSLAIDESSMTGESKIVEKNSNDPFLISGCKVADGNGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGLATLIGIVGLSVAVIVLIVLLARYFSGHTRNPDGSVQFIAGKTKVGDAIDGVIKIFTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKITPDHTPDQLSGMLRSLLFEGVVQNTNGSVYVPESGNGIEISGSPTERAILEWGIKLGMHFDDVRSQSSVVHVFPFNSDKKRGGVAIQMTTPQTDSEIHIHWKGAAEIVLGCCTGYIDVNNQLVEMDEEKMSYFKKVIERMAADSLRCIAIAFRSFERENVPTGEELAHWSLPEDDLFLLAIIGLKDPCRPGVKDAVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILDSISEATEPIIIEGKRFRALTDEGRAQIVDSILVMGRSSPNDKLLLVQALRRNGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMGQLPMGRREPLVSNFMWRNLLIQAIYQVSVLLILNFQGVKLLGLRNEPNRPAIKVKNSLIFNAFVFCQVFNEFNARKPYSFNIFKGVTRNYLFMGIVLITVVLQIVIIEFLGKFTKTVKLNWKLWLISVIIAFISWPLAVVGKLIPVPKAQLSNGVRTFFEKFKTTESEASHRR 1087
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium4728g00007 1087 Gene3D - 194 1050 - -
Vium4728g00007 1087 Pfam Cation transporter/ATPase, N-terminus 148 210 IPR004014 -
Vium4728g00007 1087 Pfam Cation transporting ATPase, C-terminus 881 1058 IPR006068 -
Vium4728g00007 1087 NCBIfam calcium-translocating P-type ATPase, PMCA-type 137 1060 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vium4728g00007 1087 FunFam Calcium-transporting ATPase 241 362 - -
Vium4728g00007 1087 Pfam E1-E2 ATPase 264 464 - -
Vium4728g00007 1087 CDD P-type_ATPase_Ca_PMCA-like 171 929 - -
Vium4728g00007 1087 PRINTS H+-transporting ATPase (proton pump) signature 796 812 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4728g00007 1087 PRINTS H+-transporting ATPase (proton pump) signature 828 853 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4728g00007 1087 PRINTS H+-transporting ATPase (proton pump) signature 642 660 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4728g00007 1087 FunFam Calcium-transporting ATPase 46 102 - -
Vium4728g00007 1087 NCBIfam HAD-IC family P-type ATPase 231 402 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4728g00007 1087 NCBIfam HAD-IC family P-type ATPase 426 510 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4728g00007 1087 NCBIfam HAD-IC family P-type ATPase 763 876 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4728g00007 1087 Gene3D - 47 102 - -
Vium4728g00007 1087 SUPERFAMILY Calcium ATPase, transduction domain A 264 359 IPR008250 -
Vium4728g00007 1087 PRINTS P-type cation-transporting ATPase superfamily signature 796 815 - -
Vium4728g00007 1087 PRINTS P-type cation-transporting ATPase superfamily signature 689 700 - -
Vium4728g00007 1087 PRINTS P-type cation-transporting ATPase superfamily signature 310 324 - -
Vium4728g00007 1087 PRINTS P-type cation-transporting ATPase superfamily signature 820 832 - -
Vium4728g00007 1087 PRINTS P-type cation-transporting ATPase superfamily signature 486 500 - -
Vium4728g00007 1087 PRINTS P-type cation-transporting ATPase superfamily signature 711 721 - -
Vium4728g00007 1087 Pfam Cation transport ATPase (P-type) 543 622 - -
Vium4728g00007 1087 FunFam Calcium-transporting ATPase 813 1062 - -
Vium4728g00007 1087 Pfam haloacid dehalogenase-like hydrolase 685 810 - -
Vium4728g00007 1087 MobiDBLite consensus disorder prediction 1 28 - -
Vium4728g00007 1087 SFLD p-type atpase 468 848 IPR044492 -
Vium4728g00007 1087 FunFam Calcium-transporting ATPase 9 plasma membrane-type 340 510 - -
Vium4728g00007 1087 Gene3D - 170 362 - -
Vium4728g00007 1087 FunFam Calcium-transporting ATPase 496 696 - -
Vium4728g00007 1087 FunFam Calcium-transporting ATPase 194 251 - -
Vium4728g00007 1087 FunFam Calcium-transporting ATPase 690 841 - -
Vium4728g00007 1087 ProSitePatterns E1-E2 ATPases phosphorylation site. 488 494 IPR018303 -
Vium4728g00007 1087 Gene3D - 483 841 IPR023214 -
Vium4728g00007 1087 Gene3D - 496 696 IPR023299 GO:0000166
Vium4728g00007 1087 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 493 693 IPR023299 GO:0000166
Vium4728g00007 1087 SFLD Haloacid Dehalogenase 468 848 - -
Vium4728g00007 1087 SMART Cation_ATPase_N_a_2 145 216 IPR004014 -
Vium4728g00007 1087 Pfam Ca2+-ATPase N terminal autoinhibitory domain 35 78 IPR024750 GO:0005516
Vium4728g00007 1087 SUPERFAMILY Calcium ATPase, transmembrane domain M 148 1060 IPR023298 -
Vium4728g00007 1087 PANTHER CATION TRANSPORTING ATPASE 110 1060 - -
Vium4728g00007 1087 SUPERFAMILY HAD-like 484 901 IPR036412 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium4728g00007 Vium-Chr4728 33903 54200 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4728g00007 2 1084 Primary Pumps ATPases AT5G57110 68.785 0.0 1506
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4728g00007 K01537 - gmx:100790157 1778.07