Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4728g00002 ATGGAAAAACATATTGTTCCTGTAACCATGGATAACCCTGATTTTGCCGTAGCCATGGATAGGTTAAAGCAGCCACAGAAGAAGAAAAACACAGGGAGGAAGAAGATTGTGATAAAGAAGATTGAGAAATGTAGCAACAAGCAAGTGACATTCTCGAAAAGAAGAGCAGGGTTGTTCAAAAAAGCGAGTGAACTGTGCATTCTGTGCAATGTTAACATAGCCATAATAGTGTTTTCTCCTGCTGAAAAGTTGTTCTGCTTTGGGCATCCAGACGTGGAAGGCATTGTTGGAAGGTACCTGAAGGGAGAGAAAGTGTTGGTAGCATCAGAGAGAAGAGGGTCATATGAAGAAAGCAACATGCAATACGAGGAGGCAGTGAAGAATTTGGCGTTGGAAAAGAAGAATCTGATAGAAACTGAAAAAATGGTTAAGGGTTTGAGCAGAAGGTGGTGGGAGGATCCCATTGATGAGATGAGTGAACGTGAGTTGGAACAGTTTATGGTGTCGCTTTATGAGTTGAGGAAGAAATTAACAGAAAGGGCTGCTCAATTGTTCATGCTTTCAATTCAATGA 573 0.4136 MEKHIVPVTMDNPDFAVAMDRLKQPQKKKNTGRKKIVIKKIEKCSNKQVTFSKRRAGLFKKASELCILCNVNIAIIVFSPAEKLFCFGHPDVEGIVGRYLKGEKVLVASERRGSYEESNMQYEEAVKNLALEKKNLIETEKMVKGLSRRWWEDPIDEMSERELEQFMVSLYELRKKLTERAAQLFMLSIQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4728g00002 190 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Vium4728g00002 190 PANTHER MADS BOX PROTEIN 33 179 - -
Vium4728g00002 190 SUPERFAMILY SRF-like 32 101 IPR036879 GO:0003677|GO:0046983
Vium4728g00002 190 Gene3D - 44 137 IPR036879 GO:0003677|GO:0046983
Vium4728g00002 190 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Vium4728g00002 190 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
Vium4728g00002 190 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Vium4728g00002 190 Coils Coil 115 139 - -
Vium4728g00002 190 FunFam Agamous-like MADS-box protein AGL62 43 108 - -
Vium4728g00002 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
Vium4728g00002 190 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4728g00002 Vium-Chr4728 25753 26631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4728g00002 32 184 Type I MADS-box Gene Family AT2G24840 46.296 1.27e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium4728g00002 SRF-TF 5.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4728g00002 - - vra:106766532 250.366