Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4725g00005 ATGTACGCCCATATTTTCTTTATCATTGTTCATCAGCTGTGTCAGTGGCTTACTAAAGTATTTGTACTCGGTACTATTTTGGATATGGACGTTGTTAATTTGTCTGCTAGTATTTTTGTGCATGCTTGTTACTACATGATATCTACTAGCAACCTTTCTTATTTCTTTGTGCAGAAAGGTCGTCTAACTGAGGATGAGGCACGGTTCTATGCAGCTGAAGTTGTTGATGCTCTTCAATACATACATAGTTTGGGAGTCATACATCGTGATATTAAGCCAGAGAACTTGTTACTCACAGCTGACGGACACATTAAAATAGCAGATTTTGGGAGTGTGAAGCCTATGCAGGATAGTCAAATCACTGTCCTTCCAAATGCAGCGTCTGATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGGCAATGACCTATGGGCACTTGGCTGCACATTATACCAAATGCTTTCTGGAACTTCCCCTTTTAAAGACGCAAGTGAATGGCTTATTTTTCAAAGAATTGTAGCAAGGGAACTTAGATTTCCAGATTACTTTTCTGATGAAGCAAGAGAGCTCATTGACCGTCTGTTGGATTTGGAACCCAGCAGAAGACCAGGTGCTGGACCTGATGGTTATGCTATTTTGAAAGCACACCCATTTTTCAAGGGGGTTGACTGGAAGAACTTGAGGGCACAAATTCCTCCAAAACTTGCTCCGGAACCTGGGACTCAGTCACCTGCAGCTGATGATGTTCATGATTCGTCATGGAGTCCTTCTCACATTGGGGATTGTCCCTCGGCTTCAGTTAGACAACCTGATGGTGCTACATCTTCTGATGGGTCTAGTCACATAACTAGGCTAGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAGTTTTTGGATCCTGGGGAATCTGTTCTTATGATCTCTATGGTGAAGAAATTACAAAAACTAACAAGCAAGAAGGTGCAGCTCATCCTCACCAACAAACCAAAGTTGATCTATGTGGACCCATCAAAGCTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATCTAAGCATCCAAGTGACTACTGCATCAAATTTCAAGATTTGCACACCTAAAAAGGTAATGTCGTTTGAAGATGCTAAGCAAAGAGCATGGCAGTGGAAGAAGGCAATTGAAGGACTTCAAAACCGGTGA 1236 0.4159 MYAHIFFIIVHQLCQWLTKVFVLGTILDMDVVNLSASIFVHACYYMISTSNLSYFFVQKGRLTEDEARFYAAEVVDALQYIHSLGVIHRDIKPENLLLTADGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIVARELRFPDYFSDEARELIDRLLDLEPSRRPGAGPDGYAILKAHPFFKGVDWKNLRAQIPPKLAPEPGTQSPAADDVHDSSWSPSHIGDCPSASVRQPDGATSSDGSSHITRLASIDSFDSKWQQFLDPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVTTASNFKICTPKKVMSFEDAKQRAWQWKKAIEGLQNR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4725g00005 411 PANTHER SERINE/THREONINE-PROTEIN KINASE 50 261 - -
Vium4725g00005 411 Coils Coil 391 411 - -
Vium4725g00005 411 SUPERFAMILY PH domain-like 228 410 - -
Vium4725g00005 411 FunFam 3-phosphoinositide-dependent protein kinase 1 282 411 - -
Vium4725g00005 411 Pfam Protein kinase domain 48 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4725g00005 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Vium4725g00005 411 SUPERFAMILY Protein kinase-like (PK-like) 31 289 IPR011009 -
Vium4725g00005 411 MobiDBLite consensus disorder prediction 272 295 - -
Vium4725g00005 411 Gene3D - 283 411 IPR011993 -
Vium4725g00005 411 MobiDBLite consensus disorder prediction 247 295 - -
Vium4725g00005 411 SMART serkin_6 7 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4725g00005 411 FunFam 3-phosphoinositide-dependent protein kinase 2-like 51 249 - -
Vium4725g00005 411 Pfam PH domain 308 410 IPR033931 -
Vium4725g00005 411 ProSiteProfiles Protein kinase domain profile. 1 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4725g00005 411 Gene3D Transferase(Phosphotransferase) domain 1 51 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4725g00005 Vium-Chr4725 22236 29156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4725g00005 57 411 AGC Kinase Gene Family AT3G10540 80.056 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Vium4725g00005 Pkinase 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4725g00005 K06276 - gmx:100788780 682.559