Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4725g00004 ATGTTGGAAATGGAGAAGGATTTTGATTCGAAGCTGAAGATTCAGGGGAATACCTCATCTTCCAATGGTGGAGGCAATGTCCAGAGATCCAAGAGCTTTGCTTTTAGGGCTCCTCAGGAGAATTACACTATCCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGTTCTTATTCTAAGGTTGTGAGGGCAAAGAAGAAGGACACAGGAACTGTCTATGCATTGAAGATCATGGATAAAAAGTTTATAACTAAGGAGAACAAAACAGCTTATGTGAAATTGGAACGCATTGTGCTAGATCAATTGGATCATCCAGGCATTGTGCGGTTATATTTCACATTTCAAGATTCATTTTCTCTATACATGGCACTTGAATCCTGCGAAGGTGGAGAACTTTTTGATCAAATAACCAGGAAAGGTCGTCTAACTGAGGATGAGGCACGGTTCTATGCAGCTGAAGTTGTTGATGCTCTTCAATACATACATAGTTTGGGAGTCATACATCGTGATATTAAGCCAGAGAACTTGTTACTCACAGCTGACGGACACATTAAAATAGCAGATTTTGGGAGTGTGAAGCCTATGCAGGATAGTCAAATCACTGTCCTTCCAAATGCAGCGTCTGATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGGCAATGACCTATGGGCACTTGGCTGCACATTATACCAAATGCTTTCTGGAACTTCCCCTTTTAAAGACGCAAGTGAATGGCTTATTTTTCAAAGAATTGTAGCAAGGGAACTTAGATTTCCAGATTACTTTTCTGATGAAGCAAGAGAGCTCATTGACCGTCTGTTGGATTTGGAACCCAGCAGAAGACCAGGTGCTGGACCTGATGGTTATGCTATTTTGAAAGCACACCCATTTTTCAAGGGGGTTGACTGGAAGAACTTGAGGGCACAAATTCCTCCAAAACTTGCTCCGGAACCTGGGTCACCTGCAGCTGATGATGTTCATGATTCGTCATGGAGTCCTTCTCACATTGGGGATTGTCCCTCGGCTTCAGTTAGACAACCTGATGGTGCTACATCTTCTGATGGGTCTAGTCACATAACTAGGCTAGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAGTTTTTGGATCCTGGGGAATCTGTTCTTATGATCTCTATGGTGAAGAAATTACAAAAACTAACAAGCAAGAAGGTGCAGCTCATCCTCACCAACAAACCAAAGTTGATCTATGTGGACCCATCAAAGCTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATCTAAGCATCCAAGTGACTACTGCATCAAATTTCAAGATTTGCACACCTAAAAAGGTAATGTCGTTTGAAGATGCTAAGCAAAGAGCATGGCAGTGGAAGAAGGCAATTGAAGGACTTCAAAACCGGTGA 1470 0.419 MLEMEKDFDSKLKIQGNTSSSNGGGNVQRSKSFAFRAPQENYTIQDFELGKIYGVGSYSKVVRAKKKDTGTVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDSFSLYMALESCEGGELFDQITRKGRLTEDEARFYAAEVVDALQYIHSLGVIHRDIKPENLLLTADGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIVARELRFPDYFSDEARELIDRLLDLEPSRRPGAGPDGYAILKAHPFFKGVDWKNLRAQIPPKLAPEPGSPAADDVHDSSWSPSHIGDCPSASVRQPDGATSSDGSSHITRLASIDSFDSKWQQFLDPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVTTASNFKICTPKKVMSFEDAKQRAWQWKKAIEGLQNR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4725g00004 489 Pfam PH domain 386 488 IPR033931 -
Vium4725g00004 489 Gene3D Transferase(Phosphotransferase) domain 1 131 333 - -
Vium4725g00004 489 Gene3D Phosphorylase Kinase; domain 1 45 130 - -
Vium4725g00004 489 Gene3D - 361 489 IPR011993 -
Vium4725g00004 489 FunFam 3-phosphoinositide-dependent protein kinase 1 360 489 - -
Vium4725g00004 489 FunFam 3-phosphoinositide-dependent protein kinase 2-like 45 130 - -
Vium4725g00004 489 MobiDBLite consensus disorder prediction 327 373 - -
Vium4725g00004 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Vium4725g00004 489 FunFam 3-phosphoinositide-dependent protein kinase 2-like 131 329 - -
Vium4725g00004 489 MobiDBLite consensus disorder prediction 350 373 - -
Vium4725g00004 489 Coils Coil 469 489 - -
Vium4725g00004 489 SUPERFAMILY Protein kinase-like (PK-like) 44 355 IPR011009 -
Vium4725g00004 489 CDD STKc_PDK1 45 314 IPR039046 GO:0004674
Vium4725g00004 489 ProSiteProfiles Protein kinase domain profile. 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4725g00004 489 Pfam Protein kinase domain 49 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4725g00004 489 MobiDBLite consensus disorder prediction 13 27 - -
Vium4725g00004 489 MobiDBLite consensus disorder prediction 1 27 - -
Vium4725g00004 489 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 341 - -
Vium4725g00004 489 SMART serkin_6 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4725g00004 489 SUPERFAMILY PH domain-like 308 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4725g00004 Vium-Chr4725 22236 41568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4725g00004 1 489 AGC Kinase Gene Family AT3G10540 81.466 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Vium4725g00004 Pkinase 1.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4725g00004 K06276 - gmx:100788780 929.087