Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4725g00002 ATGGCTGTGGGTGGTCGAAAGGGCCATCTAGGAATAGTGGACATGATAAATTTGAGCCTAATTAGAGAGCTTCAGGTAAGGGAAACAGTGCGTGATGTGGTATTCTTGCACAATGAGCTCTTTTTCGCTGCTGCACAGAAAAAGTATCCATACATCTATAATCGAGAAGGCACTGAACTTCACTGCCTTAAGGAACATGGTCCGGTGTTGAGGCTTCAGTTTCTGAAAAACCATTTTCTCTTGGCTACACTCAATAAGTTTGGGCAGCTTCGCTATCAGGATGTTACAATGGGTTCAATGGTTGGTAATTTTCGAACTGGCTTAGGACGTACAGATGTGATGCAAGTAAACCCCTTCAATGGAGTTGTTTCTTTAGGTCACTCAGGTGGTACTGTCACCATGTGGAAGCCGACCAGTTCTGCTCCTCTTATCAAGATGCTATGTCATCAGGGGCCTGTTTCAGCGCTGGCATTTCACTCAAATGGCCACTTGATGGCCACTGCAGGAAAAGATAAAAAAGTCAAGCTTTGGGACTTAAGGAAATTTGAAGTTCTTCAAACCTTACCTGGTCATGCAAATACTCTGGATTTTAGTCAGAAGGGTTTACTTGCTTGCGGTAATGGCTCATTGATCCAGGTTCTGCGAGATGTTTCTGGTACACAAAATTATTCCAGGTACATGACTCATTCCATGGTGAAAGGTTACCAGGTAGGAAAATTAATATTTCGACCATATGAAGACGTTTTAGGTATAGGGCATTCCACGGGTTGGTCTAGTATTCTTATTCCAGGAGCTGGAGAACCCAACTTTGACTCATGGGTTGCAAACCCGTTCGAAACTTCCAAACAGAGAAGAGAAAAGGAAATACGGGCTCTACTTGATAAGCTTCCCCCCGAGACTATCATGTTGAATCCCAGCAAGATTGGAACGGTGAAACCAAAAAGAGAGAAGCCAACAAAACAAGAGAGGGAGGCTGAGGTGGAAGCTGCTGTTGAAGCTGCTAAGGGCATGAAACTGAAGAAGAAGACAAAAGGAAGAAACAAACCTGGTAAAAGGGTACAGAAAAAGCAAGAGGCACTTAGTAGAGTTAAGAGGCCCTACTTGGAGCAGAAAATTCAAGAAGAGGAAAACATGTCAAGAAAGAAGCAGAAAACTAGTGAGGGTGTTGAACTACCAAAATCTTTACAACGGTTTGCTCGTAAAAAAGCATCATCGTGA 1218 0.4327 MAVGGRKGHLGIVDMINLSLIRELQVRETVRDVVFLHNELFFAAAQKKYPYIYNREGTELHCLKEHGPVLRLQFLKNHFLLATLNKFGQLRYQDVTMGSMVGNFRTGLGRTDVMQVNPFNGVVSLGHSGGTVTMWKPTSSAPLIKMLCHQGPVSALAFHSNGHLMATAGKDKKVKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNGSLIQVLRDVSGTQNYSRYMTHSMVKGYQVGKLIFRPYEDVLGIGHSTGWSSILIPGAGEPNFDSWVANPFETSKQRREKEIRALLDKLPPETIMLNPSKIGTVKPKREKPTKQEREAEVEAAVEAAKGMKLKKKTKGRNKPGKRVQKKQEALSRVKRPYLEQKIQEEENMSRKKQKTSEGVELPKSLQRFARKKASS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4725g00002 405 FunFam U3 small nucleolar RNA-associated protein 7 1 260 - -
Vium4725g00002 405 SUPERFAMILY WD40 repeat-like 1 255 IPR036322 GO:0005515
Vium4725g00002 405 SMART WD40_4 181 215 IPR001680 GO:0005515
Vium4725g00002 405 SMART WD40_4 17 54 IPR001680 GO:0005515
Vium4725g00002 405 SMART WD40_4 139 178 IPR001680 GO:0005515
Vium4725g00002 405 MobiDBLite consensus disorder prediction 352 388 - -
Vium4725g00002 405 MobiDBLite consensus disorder prediction 310 325 - -
Vium4725g00002 405 MobiDBLite consensus disorder prediction 304 325 - -
Vium4725g00002 405 Pfam WD domain, G-beta repeat 148 178 IPR001680 GO:0005515
Vium4725g00002 405 ProSitePatterns Trp-Asp (WD) repeats signature. 165 179 IPR019775 -
Vium4725g00002 405 MobiDBLite consensus disorder prediction 337 405 - -
Vium4725g00002 405 PANTHER WD-REPEAT PROTEIN BING4 1 400 IPR040315 -
Vium4725g00002 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 187 IPR001680 GO:0005515
Vium4725g00002 405 SMART BING4CT_2 225 305 IPR012952 -
Vium4725g00002 405 Pfam BING4CT (NUC141) domain 226 304 IPR012952 -
Vium4725g00002 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 180 - -
Vium4725g00002 405 Gene3D - 1 256 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4725g00002 Vium-Chr4725 4774 8821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4725g00002 38 220 U-box Gene Family AT2G33340 27.404 3.96e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4725g00002 K14768 - gmx:100802940 745.347