Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4725g00001 TTGGCCATTTATTGTATTTGTTTACAATCCATATTTGCAGAACTTGGTCCATACACACTGGATTTTACTTCAAGTGGCCGGTACATGGCTGTGGGTGGTCGAAAGGGCCATCTAGGAATAGTGGACATGATAAATTTGAGCCTAATTAGAGAGCTTCAGGTAAGGGAAACAGTGCGTGATGTGGTATTCTTGCACAATGAGCTCTTTTTCGCTGCTGCACAGAAAAAGTATCCATACATCTATAATCGAGAAGGCACTGAACTTCACTGCCTTAAGGAACATGGTCCGGTGTTGAGGCTTCAGTTTCTGAAAAACCATTTTCTCTTGGCTACACTCAATAAGTTTGGGCAGCTTCGCTATCAGGATGTTACAATGGGTTCAATGGTTGGTAATTTTCGAACTGGCTTAGGACGTACAGATGTGATGCAAGTAAACCCCTTCAATGGAGTTGTTTCTTTAGGTCACTCAGGTGGTACTGTCACCATGTGGAAGCCGACCAGTTCTGCTCCTCTTATCAAGATGCTATGTCATCAGGGGCCTGTTTCAGCGCTGGCATTTCACTCAAATGGCCACTTGATGGCCACTGCAGGAAAAGATAAAAAAGTCAAGCTTTGGGACTTAAGGAAATTTGAAGTTCTTCAAACCTTACCTGGTCATGCAAATACTCTGGATTTTAGTCAGAAGGGTTTACTTGCTTGCGGTAATGGCTCATTGATCCAGGTTCTGCGAGATGTTTCTGGTACACAAAATTATTCCAGGTACATGACTCATTCCATGGTGAAAGGTTACCAGGTAGGAAAATTAATATTTCGACCATATGAAGACGTTTTAGGTATAGGGCATTCCACGGGTTGGTCTAGTATTCTTATTCCAGGAGCTGGAGAACCCAACTTTGACTCATGGGTTGCAAACCCGTTCGAAACTTCCAAACAGAGAAGAGAAAAGGAAATACGGGCTCTACTTGATAAGCTTCCCCCCGAGACTATCATGTTGAATCCCAGCAAGATTGGAACGGTGAAACCAAAAAGAGAGAAGCCAACAAAACAAGAGAGGGAGGCTGAGGTGGAAGCTGCTGTTGAAGCTGCTAAGGGCATGAAACTGAAGAAGAAGACAAAAGGAAGAAACAAACCTGGTAAAAGGGTACAGAAAAAGNGTAATCTTCTCCATTCATTAGCCATAAAGCCTATATTTACCTTGTGCAAGGAATATGTGTATACCACTACTGATTATTGCATGTAA 1239 0.4262 LAIYCICLQSIFAELGPYTLDFTSSGRYMAVGGRKGHLGIVDMINLSLIRELQVRETVRDVVFLHNELFFAAAQKKYPYIYNREGTELHCLKEHGPVLRLQFLKNHFLLATLNKFGQLRYQDVTMGSMVGNFRTGLGRTDVMQVNPFNGVVSLGHSGGTVTMWKPTSSAPLIKMLCHQGPVSALAFHSNGHLMATAGKDKKVKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNGSLIQVLRDVSGTQNYSRYMTHSMVKGYQVGKLIFRPYEDVLGIGHSTGWSSILIPGAGEPNFDSWVANPFETSKQRREKEIRALLDKLPPETIMLNPSKIGTVKPKREKPTKQEREAEVEAAVEAAKGMKLKKKTKGRNKPGKRVQKKXNLLHSLAIKPIFTLCKEYVYTTTDYCM 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4725g00001 412 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 174 208 - -
Vium4725g00001 412 SUPERFAMILY WD40 repeat-like 17 283 IPR036322 GO:0005515
Vium4725g00001 412 Gene3D - 5 138 IPR015943 GO:0005515
Vium4725g00001 412 FunFam U3 small nucleolar RNA-associated protein 7 8 288 - -
Vium4725g00001 412 PANTHER WD-REPEAT PROTEIN BING4 14 385 IPR040315 -
Vium4725g00001 412 Pfam BING4CT (NUC141) domain 254 332 IPR012952 -
Vium4725g00001 412 Gene3D - 139 253 IPR015943 GO:0005515
Vium4725g00001 412 SMART WD40_4 45 82 IPR001680 GO:0005515
Vium4725g00001 412 SMART WD40_4 167 206 IPR001680 GO:0005515
Vium4725g00001 412 SMART WD40_4 4 42 IPR001680 GO:0005515
Vium4725g00001 412 SMART WD40_4 209 243 IPR001680 GO:0005515
Vium4725g00001 412 SMART BING4CT_2 253 333 IPR012952 -
Vium4725g00001 412 Pfam WD domain, G-beta repeat 176 206 IPR001680 GO:0005515
Vium4725g00001 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 215 IPR001680 GO:0005515
Vium4725g00001 412 ProSitePatterns Trp-Asp (WD) repeats signature. 193 207 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4725g00001 Vium-Chr4725 53 4090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4725g00001 16 229 U-box Gene Family AT2G33340 26.106 1.23e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4725g00001 K14768 - gmx:100802940 695.271