Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4723g00001 ATGGACGGTGCGCCACCATCCGCCGCCGCAGCAGCAGCAGCAGGAGGACCGGCGCCGTTTCTTCTGAAGACCTACGACATGGTTGACGACCCCTCCACCAACGACATCGTTTCGTGGAGCTCATGCAACACCAGCTTCGTCGTGTGGAATCCGCCGGAGTTCGCTCGCCTTCTTCTCCCCACCTATTTCAAGCACAACAACTTTTCCAGCTTCATCCGCCAGCTCAATACCTACGGTTTTCGAAAAATACACCCAGAGCGCTGGGAATTTGCAAATGATGAGTTTGTGAAAGATCAGAAGCATCTCCTTAAGAATATACATCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTATTGTAGATCCAGAGAGAGCAGCATTTGAGGAGGAAATTGAGAAACTTTCCCGCGAGAAAACTTCTCTTGAATCCAATATTCATAACTTCAAACAACATCAGTCAACAGCAAAGCTTCAACTAGAAGATTTTCTGCAGCGGTTAGACACTACTGAAAAGAGGCAGAAGCAATTGCTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTAGTTTTGTTGAACATCTTTCTCGCAAAATTGAATCCATGGATTTATCTGCGTATAATAAGAAGAGGCGATTGCCTCAAGCTGATCATGTTCAACCAGTTGCAGAAAGCAGCTTCGTGGACAGTCACAGCAATTTTAGAATGGAATTTGGAAATATTTTCCACCAGGATTTCTCGAATAAACTCAGACTGGAATTGTCACCTGCCGTGTCAGATATGAACTTGGTATCACGTAGCACACAGAGTTCAAATGAAGATGGGGAAAGTCCACAGAAAAAACTATCTGAAGTAGAACCAAAAGGAGTGCAGACAAGAACATCTCTTACATTTGCACCTGAAACATTAGAACTTGCGGATACGGGGGCTTCTTTTACTTTTAAGATGGATGCATGTTTGCCGCGAAAAGCAACAACTGCTGAGAACTCAAAACTGATCTCTTTGGAGCCAAGTAGTGAAGAAGGCGATAGTTGCCAGTTAAATTTAACTCTGGCATCTTGTCCAGTGCAAGTAAACAGAAATTCATACTCAGCCAGATCACCCCAAATCGACTGTCAAGAAATTGGAAAATTGGCAGAATCGAGATTTTTTGCGAGTGTAAAAGAATCTGAAAGTGGTGTTTCCTCAAACCAAAATCTAGCTGCTGAGGCCGCCAATTTAGCTTCACCACAGGAGGCTCCAAGTAACAACCAAGTTAATCCAGCTCCTCCGGACAGGGTGAATGATGTTTTCTGGGAACAGTTTCTTACCGAAAGGCCAGGCTGTTCTGACAATGAAGAGGCAATATCCAACTACCGAGCAAACCCATATGATGAGCAAGACGAAGGACGGTCAGTTCATGGAATATCTAAAAACATTAAGAACATGGATCAACTCACACTTTGA 1449 0.4424 MDGAPPSAAAAAAAGGPAPFLLKTYDMVDDPSTNDIVSWSSCNTSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDEFVKDQKHLLKNIHRRKPIHSHSHPPGSIVDPERAAFEEEIEKLSREKTSLESNIHNFKQHQSTAKLQLEDFLQRLDTTEKRQKQLLNFFEKALQNPSFVEHLSRKIESMDLSAYNKKRRLPQADHVQPVAESSFVDSHSNFRMEFGNIFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGESPQKKLSEVEPKGVQTRTSLTFAPETLELADTGASFTFKMDACLPRKATTAENSKLISLEPSSEEGDSCQLNLTLASCPVQVNRNSYSARSPQIDCQEIGKLAESRFFASVKESESGVSSNQNLAAEAANLASPQEAPSNNQVNPAPPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQDEGRSVHGISKNIKNMDQLTL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4723g00001 482 SMART hsfneu3 16 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4723g00001 482 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 278 IPR027725 -
Vium4723g00001 482 ProSitePatterns HSF-type DNA-binding domain signature. 59 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4723g00001 482 MobiDBLite consensus disorder prediction 265 293 - -
Vium4723g00001 482 Pfam HSF-type DNA-binding 20 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4723g00001 482 Coils Coil 127 154 - -
Vium4723g00001 482 Gene3D - 14 110 IPR036388 -
Vium4723g00001 482 FunFam Heat shock transcription factor 1 13 110 - -
Vium4723g00001 482 PRINTS Heat shock factor (HSF) domain signature 58 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4723g00001 482 PRINTS Heat shock factor (HSF) domain signature 20 43 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4723g00001 482 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4723g00001 482 MobiDBLite consensus disorder prediction 407 427 - -
Vium4723g00001 482 MobiDBLite consensus disorder prediction 443 482 - -
Vium4723g00001 482 MobiDBLite consensus disorder prediction 407 424 - -
Vium4723g00001 482 SUPERFAMILY "Winged helix" DNA-binding domain 16 109 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4723g00001 Vium-Chr4723 1002 6225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4723g00001 1 482 HSF AT4G13980 54.251 1.87e-170 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium4723g00001 HSF_DNA-bind 2.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4723g00001 K09419 - gmx:100816484 855.514