Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4721g00001 ATGATGATAGAAATAAGAAATAGTTTTCAACACAACCATAATAAATTTTTTAACCATGCAGGATTGATGCGAAATTTTGGCTTGAATAAAGCTACAGGATATGATGGTGATATAGCAGCTGAAATAGGAAAAGGTGTCGGAAGGTATATCTTACCGTACTTTATAATACGATTTATATTTGGTGTGGTAGTTTTTGCTGTGTTGTTGATATATAAAGGGGGAAGAAGACATAAATCAAAGTATGAAAATATTGAAGCTTTTCTACAAGAAAATACCCTCGCGCCAATAAGATACTCATATAAAGAAATAAAGCACATGACGAGGGGTTTTAAGGAAAAGTTAGGTCAAGGAGGATTTGGCTTGGTATACAAAGGAAAGCTGCGTAGTGGGTCATTTGTTGCGATAAAGATGTTGAGTAAATCAAAGTCTGATGGGCAAGATTTCATTAGTGAAGTTGGTACTATTGGAAGAATACATCATACAAATGTGGTGAGACTTATTGGATTTTGTGTGGAATCATCAAATCATGCTCTTGTTTATGAATTCATGCCTAATGGTTCTCTTGATAAATATATTTTTTCCAAGCAAGATATTATCTCTTTAACTCAGAGACAAATATACGAGATTTCTCTTGGAGTGGCTCGTGGTATTGCTTATTTGCATGAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCACATAACATCCTTTTGGACGAAAACTTTGTCCCAAAGGTTTCAGACTTTGGCTTGGCAAGACTTTATCCTACAGACAAAAGTATTATCACTTTGACTGATGTCAGGGGAACACTTGGATACATGGCGCCCGAGTTTTTTTATCATAATTTTGGAGGAGTGTCATTCAAGGCAGATGTTTATAGTTTTGGAATGCTTTTGATGGAAATGACAAATAGAAAAAGAAACTTTAATCCACATGCAAATGATTCAAGTGAATTTTTTTTTCCTCTTTGGATATACCATCAATTGAGTGGGGAAAATGAGATAGAAGGAGAAAATGTTACCAAGCAAGAATACAATGATGAGATAAAGAAGATGTTTTTAATAGCATTATGGTGTATACAACTGAAGCCAAGTGATCGTCCTCCCATGATCAAAGTAGTGGAGATGTTGGAAGGAGAACTTGAGAATATTGAAATGCCTCCAAAACCTTCTCTCTATCAGATAAATGATCACAAAACTAAATCCTACGAAACCTCTTCAAATGATTATAGTGGATCGACAAGTTATACTGAGGAAAGCATTGTTCATATTTCTCATATTTCTTCTGAATTTTCTACTTGA 1308 0.344 MMIEIRNSFQHNHNKFFNHAGLMRNFGLNKATGYDGDIAAEIGKGVGRYILPYFIIRFIFGVVVFAVLLIYKGGRRHKSKYENIEAFLQENTLAPIRYSYKEIKHMTRGFKEKLGQGGFGLVYKGKLRSGSFVAIKMLSKSKSDGQDFISEVGTIGRIHHTNVVRLIGFCVESSNHALVYEFMPNGSLDKYIFSKQDIISLTQRQIYEISLGVARGIAYLHEGCDMQILHFDIKPHNILLDENFVPKVSDFGLARLYPTDKSIITLTDVRGTLGYMAPEFFYHNFGGVSFKADVYSFGMLLMEMTNRKRNFNPHANDSSEFFFPLWIYHQLSGENEIEGENVTKQEYNDEIKKMFLIALWCIQLKPSDRPPMIKVVEMLEGELENIEMPPKPSLYQINDHKTKSYETSSNDYSGSTSYTEESIVHISHISSEFST 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4721g00001 435 ProSitePatterns Protein kinases ATP-binding region signature. 114 136 IPR017441 GO:0005524
Vium4721g00001 435 SMART serkin_6 108 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4721g00001 435 SUPERFAMILY Protein kinase-like (PK-like) 93 380 IPR011009 -
Vium4721g00001 435 ProSiteProfiles Protein kinase domain profile. 108 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4721g00001 435 PANTHER RUST RESISTANCE KINASE LR10-RELATED 80 401 IPR045874 GO:0004672
Vium4721g00001 435 Pfam Protein kinase domain 111 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4721g00001 435 FunFam serine/threonine-protein kinase PBS1-like 76 182 - -
Vium4721g00001 435 Gene3D Phosphorylase Kinase; domain 1 71 182 - -
Vium4721g00001 435 FunFam PR5-like receptor kinase 183 391 - -
Vium4721g00001 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Vium4721g00001 435 Gene3D Transferase(Phosphotransferase) domain 1 183 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4721g00001 Vium-Chr4721 253 2203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4721g00001 55 420 Receptor kinase-like Gene Family AT4G18250 45.455 1.51e-105 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium4721g00001 Pkinase 8.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4721g00001 - - pvu:PHAVU_001G075800g 694.886