Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium471g00008 ATGACAGACAACAATCCAAAACCACCACCTGATACACCTGACAGTGATGATTTCTGCAACCAGTGGCCTTTTGAGCTCTCTGAGTACATGCAATTCGATGATAACCAATGGATGCATGACGATATTCCGTCTTTTTCTTCTGAGAATGTCTCCAACCAGGTTCATCAACCCAGTAATGTACGTGAGTTTGAAGGAGACGAAAGCTACTTTGAAGGGTCTTCTAGCAGAGAAACTGGTGGACGTGAGAATCGGCAAGTTGTTAGAGAGAGATTTGCATTCAAAACAATTTCAGAGATTGAAGTGCTAGACGATGGATACAGATGGAGGAAGTACGGAAAGAAAATGGTGAAGAACAATCCCAATCCAAGGAATTACTATAGATGTTCAGTGGATGGATGCTCTGTGAAGAAGAGAGTGGAGAGAGATAAGGATGACCCTAGGTGTGTAATAACAACCTACGAAGGAAACCACACTCATCCAAGTTCTTCCTAG 492 0.4268 MTDNNPKPPPDTPDSDDFCNQWPFELSEYMQFDDNQWMHDDIPSFSSENVSNQVHQPSNVREFEGDESYFEGSSSRETGGRENRQVVRERFAFKTISEIEVLDDGYRWRKYGKKMVKNNPNPRNYYRCSVDGCSVKKRVERDKDDPRCVITTYEGNHTHPSSS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium471g00008 163 MobiDBLite consensus disorder prediction 60 83 - -
Vium471g00008 163 FunFam WRKY transcription factor 57 88 162 - -
Vium471g00008 163 Pfam WRKY DNA -binding domain 103 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium471g00008 163 MobiDBLite consensus disorder prediction 1 20 - -
Vium471g00008 163 SMART WRKY_cls 102 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium471g00008 163 MobiDBLite consensus disorder prediction 40 83 - -
Vium471g00008 163 SUPERFAMILY WRKY DNA-binding domain 95 161 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium471g00008 163 MobiDBLite consensus disorder prediction 40 59 - -
Vium471g00008 163 Gene3D WRKY domain 89 155 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium471g00008 163 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 4 161 IPR044810 GO:0003700
Vium471g00008 163 ProSiteProfiles WRKY domain profile. 97 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium471g00008 Vium-Chr471 79318 80588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium471g00008 35 161 WRKY Transcription Factor Family AT5G26170 49.650 3.72e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium471g00008 WRKY 5.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium471g00008 - - gmx:100796836 275.404