Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium471g00005 ATGTTGCCAACCATTGAAAATTTCCACCACTCGAAAGCTTTTCTTCTGTTCCTCATCCTCTGTATCCTTCCAATAAACTTGGCTCAACCACTTTCCTTCACCATAGCTAACTTTAACGACACTAAAAATGCAAGCATCGTTGGATACGCCGGCGTGGCCAAGGTTGAGGACGGATCTGTTGTGCTCAACCCAATCATCGAGAATGGAAAGGGAAGAGTCATTTATGGCCAACCTTTACGCCTAAAAAACTCTTCTGATGGACTTGCCACTGACTTTTCAACTCGTTTTTCATTCACTATCGACGCAACAGTAGCCAAATACGGTGATGGCTTTGCCTTCTTCTTGGCACCCCTTTTATACCAGATTCCGACCGCCACTTCTAATGGCTCCCTTCTCGGCCTATACGATGCCACCCAAAGTAACATCATTGCTGTCGAATTTGACACTTATTTAAACGAGTTAGACCCACCAGTGCAACACGTAGGGATCAACAATAACTCTGTGGCATCTCTCAATTATAGCAAGTTTGATATTGAAAACAACTTAGGGAAGATGGTGCATGCTTTGATAACTTACAATGCTTCTTCCCAACTCCTGGCTGTTTCGTGGTCCTTCGATGGAACTAAATCTTCTTCTACTCCTAGCGGTTATCTTTCGTACAAGATCGACCTGTGGGAAGTCTTGCCGGAGTGGGTCAATGTTGGGTTTTCGGGTTCAACTGGATCGTCCACTGAGAAAAACGTGATCCATACCTGGGAGTTCAGTTCAAACCTAGATCTTAATTCTACGCATGGAGTGGAATGTGACATCGCAACCAAATGCAAGGTTCAGGTCAAGATAGTAGTTATTACAGTAATTTGTTCTGTTGTTTTTGTGCTTGTGGTTATTAGTATTTCTTGGTTGATTATCAAAAGGAGAAGAACAGAGGATGGTTTTGGTTTAGATAGAGATGTCATGCCTAGAAGGTTTGGTTATGAGGAAATAGTTGCAGCCACGAACGGGTTTGCAGATGATAGAAGGCTGGGAGAAGGAGGCTCTGGACAAGTTTACAAAGGGTTTCTGGGAGATTCAGGGCGCGTGGTTGCTGTGAAAAGGATTTTTTCTGATGTCGAAGATTCTGAGAGAATATTTAGAAACGAGGTGAACATTATAAGTCGTCTTATACATAGAAACCTTGTGCAATTCATGGGGTGGTGCCAAGAGAAAGAAGAGTTATTACTGGTTTTTGAGTACATGAGTAATGGAAGCCTTGACAATCATCTGTTTGGCAACAGAAGAAGTTTGACATGGGATGTGAGATACAAGATAGCATTAGGTGTGGCTAGAGCACTTCGCTATCTTCATGAAGACGCGGAGCAGAGTGTTCTTCATAGGGACATAAAATCAGCTAATGTTTTGTTGGACACAGATTTCAACACAAAGATTAGTGACTTTGGGATAGCAAGGTTGGTGGATCCAAGATTGAGGACTCAGAGGACAAAGGTGGTGGGGACATATGGGTACCTAGCTCCAGAATATATAAACGAAGGGAGGCTTAGCAAAGAATCAGACATGTACAGTTTTGGGGTTTTGGCTTTGGAGATAGCATGTGGAAGGAGGACTTACCAGGATGGCGAAGATAATCATGTGCCTTTGGCGAAATGGGTATGGAAACATTATGTGGATGGGAATATTTTGAATGCTGCTGATGAGGAATTGAAGATGGATTTTGACATATATGAAATGAAATGCTTGCTCAATGTAGGAATATGGTGTACCCTTCAAGATCACAAGGAAAGGCCAACCTCAGAACAGGTTATAAATGTTCTTAAACAAGCAGTGCCCTTGCCGATGTTTTCTGCAAAATTCTCTAATAATGGGCAACCGGATCCCTTTGAATCGTCATCCAGAAAAGCATAA 1899 0.425 MLPTIENFHHSKAFLLFLILCILPINLAQPLSFTIANFNDTKNASIVGYAGVAKVEDGSVVLNPIIENGKGRVIYGQPLRLKNSSDGLATDFSTRFSFTIDATVAKYGDGFAFFLAPLLYQIPTATSNGSLLGLYDATQSNIIAVEFDTYLNELDPPVQHVGINNNSVASLNYSKFDIENNLGKMVHALITYNASSQLLAVSWSFDGTKSSSTPSGYLSYKIDLWEVLPEWVNVGFSGSTGSSTEKNVIHTWEFSSNLDLNSTHGVECDIATKCKVQVKIVVITVICSVVFVLVVISISWLIIKRRRTEDGFGLDRDVMPRRFGYEEIVAATNGFADDRRLGEGGSGQVYKGFLGDSGRVVAVKRIFSDVEDSERIFRNEVNIISRLIHRNLVQFMGWCQEKEELLLVFEYMSNGSLDNHLFGNRRSLTWDVRYKIALGVARALRYLHEDAEQSVLHRDIKSANVLLDTDFNTKISDFGIARLVDPRLRTQRTKVVGTYGYLAPEYINEGRLSKESDMYSFGVLALEIACGRRTYQDGEDNHVPLAKWVWKHYVDGNILNAADEELKMDFDIYEMKCLLNVGIWCTLQDHKERPTSEQVINVLKQAVPLPMFSAKFSNNGQPDPFESSSRKA 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium471g00005 632 SMART serkin_6 335 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium471g00005 632 SUPERFAMILY Protein kinase-like (PK-like) 318 610 IPR011009 -
Vium471g00005 632 ProSitePatterns Legume lectins alpha-chain signature. 228 237 IPR000985 -
Vium471g00005 632 Pfam Legume lectin domain 31 260 IPR001220 GO:0030246
Vium471g00005 632 ProSitePatterns Protein kinases ATP-binding region signature. 341 364 IPR017441 GO:0005524
Vium471g00005 632 ProSitePatterns Legume lectins beta-chain signature. 143 149 IPR019825 -
Vium471g00005 632 PANTHER - 50 607 - -
Vium471g00005 632 Gene3D Transferase(Phosphotransferase) domain 1 412 618 - -
Vium471g00005 632 Gene3D Phosphorylase Kinase; domain 1 320 411 - -
Vium471g00005 632 FunFam L-type lectin-domain containing receptor kinase IX.1 320 411 - -
Vium471g00005 632 CDD lectin_legume_LecRK_Arcelin_ConA 31 258 IPR001220 GO:0030246
Vium471g00005 632 Gene3D - 29 269 - -
Vium471g00005 632 Pfam Protein kinase domain 336 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium471g00005 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Vium471g00005 632 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 262 IPR013320 -
Vium471g00005 632 ProSiteProfiles Protein kinase domain profile. 335 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium471g00005 632 FunFam L-type lectin-domain containing receptor kinase IX.1 412 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium471g00005 Vium-Chr471 63143 65547 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium471g00005 11 616 Receptor kinase-like Gene Family AT5G10530 42.047 3.72e-152 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium471g00005 Pkinase 6.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium471g00005 - - vra:106763733 885.174