LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium471g00004	ATGAGAATGAGGTTGCTAGAGATGGTGACAACTTTTGTTCTTCTGCTGCTTCTTCGTCCTCCCTTTCTTAAAACTGTAGAATCACTAAATTTCAACATAACAAACTTCAACGACCCTGAGAGTGCACAAAACATGGCATACATAGGTGATGGCAAAGCCAGCAACGGCAGCGTAGAACTCAACATTGTGGACTATCTTTTCCGCGTTGGAAGAGCCTTGTACGCAAAACCTCTGCACCTGTGGGATCAAGCATCGAATGTTCTCACAGACTTCACCACACACTTCACTTTCTCCATTGACAGAGCCAAAAACGGCACCTATGCCGACGGTTTCGCCTTCTACATCGCCCCTCATGGCTACCCGATTCCTCCCAACTCAGGTGGTGGCACTTTTGCCCTTTTCAACACCACCTCCAACACCTTTATTCGCCACAACCACGTCCTCGCGGTTGAATTTGACACTTTCAATGGCACCATTGACCCTCCCATGCAGCACGTTGGCATAGACGATAACTCTCTCGTCTCCGTGACTTCTGCCAAATTTGACATTGACAAAAACCTGGGAAAGAAATGTAACGTTTTGATAACCTACACTTCTTCCAGCAAGACCCTCTTTGTGGCTTGGTCCTTCAACGGAACAGCAACGTCACACTCCAATTCTTCACTTTCTTACACGATTGACCTCATGGAAATTCTACCAGAGTGGGTGGATGTGGGGTTCTCCGCTTCAACAGGCGAATTCACCGAACACAATGTTATTTACACCTGGGACTTTAGTTCAACGTTGAATTCGGATGCTTCGGATAATTCCTCCGGTGGCGGGAACGGAAAACGAAACGTTTGGGTGATTGCTGTGGCGACTTCTTCGGCGGTCTTGGTGGCCGTGGTTGTGAGTGTTGCAGTCTGGGCAATGATGAGGAAGAAAAGAAGGGATAAGGTTGATAAGAGTAATGATGGTGAAGGTGGAGCCAACTTGGTTAAGTTTGATTTGGATAGAGCAACTATACCAAGAAGATTTGATTACAGAGAACTACTTGCAGCCACCAACGGATTCGCAGATGATAGAAAGCTTGGACGAGGAGCTTCGGGACAGGTTTTCAAAGGGGTTCTGAGTGATTTGGGGAGGGTTGTTGCGGTGAAAAGGATTTTCGCTAAGTTTGCAAATTCAGAGAGAGTTTTCATCAATGAGGTTAGGGTCATAAGCCGTCTTATACACAGAAACTTGGTGCAGTTCGTAGGGTGGTGCCACGAGCAAGGTGAGTTTCTGTTGCTTTTTGAGTACATGCCTAATGGAAGCCTCGACACTCATCTCTTTGGGGACAAAAAACCTTTGACCTGGGATGTTAGGTACAAGGTAGCATTAGGAGTGGCTTCAGCAGTTCGTTATCTTCATGAAGATGCGGAGCAGTGTGTTCTTCACAGGGATATTAAGTCAGCAAATGTGTTGTTGGACACAGATTTTAGCACCAAGCTTGGAGATTTTGGAATGGCAAAGTTTGTGGATCCAGGGTTGAGGACTCAAATGACAGGGGTGGTGGGGACTTTCGGGTACCTTGCCCCAGAATACATCAACGGACGTAAGGCTAGCAAGGAATCAGACATTTACAGTTTTGGGGTTGTGGCTCTTGAGATCGCATGTGGAAGGAGGACTTACCATGATGGAGAGTTTCATGTGCCTCTGATGAACTGGGTGTGGCAAGAGTATGTGAAAGGGAATGTGATGGATGTTGTTGATGAGAGACTGAACAAAGAGTTTAATGTGGATGAAATGAGAAGCTTGATCATTGTGGGATTGTGGTGTACTAACCCTAACGACAAGGAAAGGCCAAAGGCTGCACAAGTGATAAAAGTTCTTGAGTTAGAAGCACCATTGCCAGAGCTTCCACTTGATATGCATGACCGTCTTCCTCCTTCTCTAGTTAAATATTCAGAACAACCTAATTTTCAGTCCGTTCAGACACTACCTTTCACCGACAGCTTTATAAGTGTTGGACGTTAA	1998	0.459	MRMRLLEMVTTFVLLLLLRPPFLKTVESLNFNITNFNDPESAQNMAYIGDGKASNGSVELNIVDYLFRVGRALYAKPLHLWDQASNVLTDFTTHFTFSIDRAKNGTYADGFAFYIAPHGYPIPPNSGGGTFALFNTTSNTFIRHNHVLAVEFDTFNGTIDPPMQHVGIDDNSLVSVTSAKFDIDKNLGKKCNVLITYTSSSKTLFVAWSFNGTATSHSNSSLSYTIDLMEILPEWVDVGFSASTGEFTEHNVIYTWDFSSTLNSDASDNSSGGGNGKRNVWVIAVATSSAVLVAVVVSVAVWAMMRKKRRDKVDKSNDGEGGANLVKFDLDRATIPRRFDYRELLAATNGFADDRKLGRGASGQVFKGVLSDLGRVVAVKRIFAKFANSERVFINEVRVISRLIHRNLVQFVGWCHEQGEFLLLFEYMPNGSLDTHLFGDKKPLTWDVRYKVALGVASAVRYLHEDAEQCVLHRDIKSANVLLDTDFSTKLGDFGMAKFVDPGLRTQMTGVVGTFGYLAPEYINGRKASKESDIYSFGVVALEIACGRRTYHDGEFHVPLMNWVWQEYVKGNVMDVVDERLNKEFNVDEMRSLIIVGLWCTNPNDKERPKAAQVIKVLELEAPLPELPLDMHDRLPPSLVKYSEQPNFQSVQTLPFTDSFISVGR	665

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium471g00004	665	ProSitePatterns	Protein kinases ATP-binding region signature.	357	380	IPR017441	GO:0005524
	Vium471g00004	665	CDD	lectin_legume_LecRK_Arcelin_ConA	29	262	IPR001220	GO:0030246
	Vium471g00004	665	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	471	483	IPR008271	GO:0004672\|GO:0006468
	Vium471g00004	665	Pfam	Protein kinase domain	352	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium471g00004	665	SUPERFAMILY	Concanavalin A-like lectins/glucanases	27	266	IPR013320	-
	Vium471g00004	665	FunFam	L-type lectin-domain containing receptor kinase IX.1	428	628	-	-
	Vium471g00004	665	ProSitePatterns	Legume lectins alpha-chain signature.	232	241	IPR000985	-
	Vium471g00004	665	Gene3D	Phosphorylase Kinase; domain 1	322	427	-	-
	Vium471g00004	665	Gene3D	Transferase(Phosphotransferase) domain 1	428	633	-	-
	Vium471g00004	665	PANTHER	-	55	623	-	-
	Vium471g00004	665	Gene3D	-	26	272	-	-
	Vium471g00004	665	SUPERFAMILY	Protein kinase-like (PK-like)	335	650	IPR011009	-
	Vium471g00004	665	FunFam	L-type lectin-domain containing receptor kinase IX.1	336	427	-	-
	Vium471g00004	665	Pfam	Legume lectin domain	28	269	IPR001220	GO:0030246
	Vium471g00004	665	ProSiteProfiles	Protein kinase domain profile.	351	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium471g00004	665	ProSitePatterns	Legume lectins beta-chain signature.	148	154	IPR019825	-
	Vium471g00004	665	CDD	STKc_IRAK	357	619	-	-
	Vium471g00004	665	SMART	serkin_6	351	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium471g00004	Vium-Chr471	56002	58512	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium471g00004	8	631	Receptor kinase-like Gene Family	AT5G10530	44.637	1.98e-175	513

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vium471g00004		Pkinase	3.1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium471g00004	-		-	vra:106763732	1122.07