Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium471g00003 ATGCAAGTTTCGCGTGAATCATCTTCTTCCGTGTCTTCCCTGGAACCTGCAAAGACATATAAGACAAACCTGAACTTGCATCCTCGTACCCAGTATACTGTGTCAGAGAAAACCATGTTAGCTACCTCACAAAATTCCCACCACTCGACAACTTTTCTTCTGCTTATCCTTCCAATAGTCATAGTTCAACCATTCTCCTTCAGTATAACTAACTTTGAAGACTCTGAAAGTGCAGCCCTAGTTGGATACGCAGGCGTAGCTAAGATTGAGAACGGAAGCATACTACTCAACCCACTCACCTACAGTGGAGTTGGAAGAGCAATCTATGGCCAACCTCTACACCTCAAAAACTCTTCTAACGAACGAGTCACCGATGTTTCAACTCGTTTTTCATTCACTATCCAATCCCCTAATTCCCTTTACGGTGACGGCTTTGCCTTCTACGTCGCACCTCTTTCCTACCAGATTCCGGAAACCGACAAAACTGGTTACGGTCTCGGCTTATACGGTGAAAACATATCCATAGTTGCTGTCGAATTTGACACTTTTATAAACGACTTAGACCCACCAATTCAGCACGTAGGGATCAACAATGGCTCTGTGGTATCTCTCAATTATACCAAGTTTGATATTGAGAACAACAGAGGGAACATGGGGCATGCGTTGATAACGTACAACGCTTCTGCCAAACTCCTTGCTGTTTCGTGGTTCTTTGATATAAATAGTTCCTCTTCTACGCCTAACGCTTATCTTTCCCACCAGATCGACCTAGCGGAGCTTCTACCAGAGTGGGTCGCTCTTGGTTTTTCAGGATCAACCGGATCGTCCATTGAGGAAAACGTTATCCATTACTGGGAATTCAGTTCTAGTCTGGATCTAACAATTTCCCCACCAAACGAAGAAAATGTCATCACAACAAAATACAAGGGTCGGGGAAAAGTAGTGGTTGTTGCAGTGATTTGCTCTATTATTTTTGCGACGGTGGTTGTTAGTATTACGTGTTGGATGATCAAGAAGAGAAGAAAGGAGGGTGAATTTGGTTTTGACAGAGAAGCTACGCCTAGAAGGTTTGGTTACAACGAGTTAGTTGCAGCCACGAACGGGTTTGCAGATGATAGAAGAGTTGGAGAAGGTGGGCATGGAGAAGTTTACAAAGGGTTTATGAGTGATTTAGGGCGTGTGGTGGCGGTGAAAAGGATTTGTTCAGACGTGGAAGATTCGGAGAGAACATTCAGAAACGAGGTGAAGATTATAAGCCGGCTTATACATAAAAACCTAGTGCAGTTGATTGGGTGGTGCGAGGAGGAAGGGGAGTTATTGATAGTTATGGAGTACTTAGATAATGGAAGCCTTGAGACTCATCTGTTTGGGAACAGAAGGAGTTTGAAATGGGATGTGAGGTACTGCATAGCATTAGGTGTGGTGAGAGCAATTCGTTATCTTCATGAAGACACGGAGCAGTGTGTTGTTCATAGGAATATTAAGCCTGGTAATGTGTTGTTAGACAGCGATTTCAATGCTAAGCTTAGTGATTTTGGAATGGCGAAGTTGGTGGATCCGAGATTGAGGAGTCAGAAGACAAGGGTGGTGGGGACATATGGATATCTTGCTCCTGAATATGTGAATGAAGGAAGGGCTAGCAAGGAATCAGACATGTACGGTTTTGGGGTGTTGGCTTTGGAAATAGCATGTGGAAGGAGGAGTTACAGGGATGAGGAGTATAATCATGTGCCTTTGATGAATTGGGTGTGGAAACTTTATGTTGACGGGAAGATTTTGAATGCTGCTGATGAGAAATTGAAGAGCGATTTTGATGTGAGTGAAATGAGATGCTTGCTCACTGTGGGGATATGGTGTACCCTACAAGACCATAAGGAAAGACCAACAGCAGAACAGGTTATTAATGTTCTTAAACAAAAAGTGTCGTTGCCAGTGCTTTCTACTAAACATGCATGA 1956 0.4346 MQVSRESSSSVSSLEPAKTYKTNLNLHPRTQYTVSEKTMLATSQNSHHSTTFLLLILPIVIVQPFSFSITNFEDSESAALVGYAGVAKIENGSILLNPLTYSGVGRAIYGQPLHLKNSSNERVTDVSTRFSFTIQSPNSLYGDGFAFYVAPLSYQIPETDKTGYGLGLYGENISIVAVEFDTFINDLDPPIQHVGINNGSVVSLNYTKFDIENNRGNMGHALITYNASAKLLAVSWFFDINSSSSTPNAYLSHQIDLAELLPEWVALGFSGSTGSSIEENVIHYWEFSSSLDLTISPPNEENVITTKYKGRGKVVVVAVICSIIFATVVVSITCWMIKKRRKEGEFGFDREATPRRFGYNELVAATNGFADDRRVGEGGHGEVYKGFMSDLGRVVAVKRICSDVEDSERTFRNEVKIISRLIHKNLVQLIGWCEEEGELLIVMEYLDNGSLETHLFGNRRSLKWDVRYCIALGVVRAIRYLHEDTEQCVVHRNIKPGNVLLDSDFNAKLSDFGMAKLVDPRLRSQKTRVVGTYGYLAPEYVNEGRASKESDMYGFGVLALEIACGRRSYRDEEYNHVPLMNWVWKLYVDGKILNAADEKLKSDFDVSEMRCLLTVGIWCTLQDHKERPTAEQVINVLKQKVSLPVLSTKHA 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium471g00003 651 ProSitePatterns Legume lectins beta-chain signature. 176 182 IPR019825 -
Vium471g00003 651 CDD lectin_legume_LecRK_Arcelin_ConA 65 291 IPR001220 GO:0030246
Vium471g00003 651 FunFam L-type lectin-domain containing receptor kinase IX.1 446 647 - -
Vium471g00003 651 SUPERFAMILY Concanavalin A-like lectins/glucanases 62 291 IPR013320 -
Vium471g00003 651 Gene3D Transferase(Phosphotransferase) domain 1 446 650 - -
Vium471g00003 651 SUPERFAMILY Protein kinase-like (PK-like) 353 637 IPR011009 -
Vium471g00003 651 Gene3D Phosphorylase Kinase; domain 1 354 445 - -
Vium471g00003 651 PANTHER - 85 639 - -
Vium471g00003 651 Gene3D - 63 301 - -
Vium471g00003 651 ProSiteProfiles Protein kinase domain profile. 369 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium471g00003 651 FunFam L-type lectin-domain containing receptor kinase IX.1 354 445 - -
Vium471g00003 651 ProSitePatterns Legume lectins alpha-chain signature. 261 270 IPR000985 -
Vium471g00003 651 ProSitePatterns Protein kinases ATP-binding region signature. 375 398 IPR017441 GO:0005524
Vium471g00003 651 Pfam Legume lectin domain 66 292 IPR001220 GO:0030246
Vium471g00003 651 Pfam Protein kinase domain 370 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium471g00003 Vium-Chr471 39371 41326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium471g00003 54 649 Receptor kinase-like Gene Family AT5G10530 41.467 2.14e-157 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium471g00003 Pkinase 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium471g00003 - - vum:124841915 1287.32