Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium471g00002 ATGAGGCATGTGGGGATAAACAATAATTCTATGGTGTCTCTCAATTCTTCCTTTTTTGATATTGAGAGCAACATAGGGAACATGGGGCATGCGTTGATAACTTACAATTCTTCTGCCAAACTCCTTGCTGTTTCATGGTTCTTTGAGGGAACCAGTTCTGGTTTTATGCCTAACACTTCTCTTTCGTACCAGATTGACCTGGGGGAAATTCTCCCGGAGTGGGTCACTGTTGGGTTTTCGGGTGCAACCGGGGCGTCTAATGAGGAGAATGTTATTCATTCTTGGGAATTCACGTCAACTCTGAATTCCACACCGTTAAACAATAAAGAAAAAGATGGCAATAATGACATCATAGTTAAATACAAGTTTTCAGTCCAAGTAGTAGCTGTTGCAGTGAGTTGTTCTGTTTTGTTTATGCTCGTGGTTGCTGCAGTTTCTTGTTTTATCATCATCAAGAAGAGAAGAAGCGAAGATGGTTTTGGTTTCAATGGAGCAGCTATGCCCAGAAGGTTTGGTTATAAAGAGTTAGTTGCAGCCACCAACGGGTTTGCAGATGATAGAAGGCTGGGAGAAGGAGGCACTGGACAAGTTTACAAAGGGTTTCTGAGTGATCTAGGGAGTGTGGTTGCAGTGAAAAGGATATTTTCTGATGTTGAAGATTCGGAGAGAATATTCACAAACGAGGTGAAGATTATAAGTCGTCTTGTGCATAAAAACCTGGTGCAATTGATGGGGTGGTGCAATGAGGAAGGAGAGTTGTTACTGGTTTTTGAGTACATGAGTAATGGAAGCCTTGACACTCATATATTTGGCAACAGGAGAACCTTGACATGGAGTGTGAGATACAATATAGCGTTAGGTGTGGCTAGGGCACTGTGTTATCTTCATGAAGAGGTGGAGCAGTGTGTTCTTCATAGAGACATAAAGTCAAGTAATGTTTTGTTAGACACAGATTTCAACACTAAGGTTAGTGACTTTGGGATAGCAAAGCTGGTGGATCCAAGGTTGAGGACTCAGAAGACAAGGGTGGTGGGGACATATGGGTACCTTGCACCTGAATATGTGAATGAAGGAAGGGCTAGCAAGGAGTCTGACATGTATGGTTTTGGGGTTGTGGCTTTGGAGATAGGTTGTGGAAGGAGGACTTACCAGGATGGAGAGTATAACCATGTGCCATTGACAAATTGGGTGTGGAAAAAGTATGTGGATGGAGATATTTTGGATGCTGTGGATGAGGGATTGAAGGGAGATTATGATGTGGAAGAAATGAGATGTTTGCTCACTGTTGGAATATGGTGTACTCACCCAGATCACAGGCAAAGGCCAAAGGCAGAACAGGTTATTAATGCTCTAAAGCAAGAGACGCCATTGCCAATGCTTTCACTATAA 1389 0.4269 MRHVGINNNSMVSLNSSFFDIESNIGNMGHALITYNSSAKLLAVSWFFEGTSSGFMPNTSLSYQIDLGEILPEWVTVGFSGATGASNEENVIHSWEFTSTLNSTPLNNKEKDGNNDIIVKYKFSVQVVAVAVSCSVLFMLVVAAVSCFIIIKKRRSEDGFGFNGAAMPRRFGYKELVAATNGFADDRRLGEGGTGQVYKGFLSDLGSVVAVKRIFSDVEDSERIFTNEVKIISRLVHKNLVQLMGWCNEEGELLLVFEYMSNGSLDTHIFGNRRTLTWSVRYNIALGVARALCYLHEEVEQCVLHRDIKSSNVLLDTDFNTKVSDFGIAKLVDPRLRTQKTRVVGTYGYLAPEYVNEGRASKESDMYGFGVVALEIGCGRRTYQDGEYNHVPLTNWVWKKYVDGDILDAVDEGLKGDYDVEEMRCLLTVGIWCTHPDHRQRPKAEQVINALKQETPLPMLSL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium471g00002 462 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 204 IPR013320 -
Vium471g00002 462 Gene3D Transferase(Phosphotransferase) domain 1 260 460 - -
Vium471g00002 462 SMART serkin_6 183 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium471g00002 462 ProSitePatterns Protein kinases ATP-binding region signature. 189 212 IPR017441 GO:0005524
Vium471g00002 462 SUPERFAMILY Protein kinase-like (PK-like) 167 451 IPR011009 -
Vium471g00002 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Vium471g00002 462 FunFam L-type lectin-domain containing receptor kinase IX.1 168 259 - -
Vium471g00002 462 ProSitePatterns Legume lectins alpha-chain signature. 71 80 IPR000985 -
Vium471g00002 462 PANTHER - 3 454 - -
Vium471g00002 462 Pfam Protein kinase domain 184 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium471g00002 462 Gene3D - 1 124 - -
Vium471g00002 462 Gene3D Phosphorylase Kinase; domain 1 168 259 - -
Vium471g00002 462 ProSiteProfiles Protein kinase domain profile. 183 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium471g00002 462 Pfam Legume lectin domain 2 109 IPR001220 GO:0030246
Vium471g00002 462 FunFam L-type lectin-domain containing receptor kinase IX.1 260 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium471g00002 Vium-Chr471 23761 25149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium471g00002 3 460 Receptor kinase-like Gene Family AT5G10530 45.648 8.72e-141 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium471g00002 Pkinase 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium471g00002 - - gmx:100800327 749.969