Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4718g00007 ATGCCACTTCGAGCTCGCACAGTAACTGCAAGCTTGCGGCGGTCTCTTCGTTGTCTCCACCTTAGCTTCTGTTCTTTCTCTCTGTCAAAATCTCAGTTTTCTGCCAATTGTCACGAATTTTTGCCGTGGTTGGAGCGGAAAGCTGAATCTGCAGTTTCTTCCTCACTTTTCATCGGCAAATCTTCTTATGGAAGGTCTCTGTTTGCTTCCAAGACAATACAAACTGGAGATTGCATTTTAAAGGTTCCTTACAGAGTGCAAATTACTGCTGATAATCTTCCTCCTGAAATCAAATCTTTGATCGGTGAGGAAGTGGGAAATATTGCGAAACTTGCTATTGTTATTCTCGTTGAGAAGAAAATGGGTCAGGGTTCTGAATGGTATCCTTATATCAGCCATCTTCCACAGCAAGGGGAGCAACACAATACAGTATTTTGGAATGAAAGTGAGTTGGAGTTGATTCATCCAAGTACAGTTTATCAAGAAACTATTGACCATAAATCTCAAATTGAAAAGGATTTTTTGACAATCAAGCGTGTTTTTGAATCTTTCGATGTGAGTTTTGAAGATTTTACCTTCAAGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAAGGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCATGATGGACTTTCAGAAGCAATTGTAATGAGTGATGACGACAAACAATGCTCAGAAATTATTGCTGATCGTGACTATGCCCCTGGTGAACAGGTCCTAATAAGATATGGAAAGTTTTCAAATGCTACACTACTGCTGGACTTTGGTTTTTCAATTCCATACAACATTTACGATCAGGTTAAGGTCCAGTTTGATGTACCTAAGCATGACCCTTTGCATGACATGAAGTTGGAACTCTTGCAACGAAACATTGTACCTCATCCTGAAGATATGGAGGACTTGACATATCCTGTGAATACCTTCAGTATCAAGGAGGTGAAGTCGGATAGAGGAAAAGGGAAGGGTCTTCCACAGTCACTTCGTGCGCTTGCTCGTGTTCTTTCTTGTGCCACATCTCAGGAACTTTACGATTTGGTCGAGGAAGCTGCTCAAAATGATGGAAGGCTGGCTAGGCGCCCTTTAAAGGATATCAACAGAGAGATCCAAGCACACCTGATGTTGTTATCAGTATTCATCCAATTAATTGAGGAGCGCAATGCGATTATTATGTCACTGGGTTCTTGTCATAGCCCTCTCTTTTGTGAAAGACTTCCTGTTAGAAGAATAATGGCTCAAGATCTCCTACATGGTGAGCTTCGCATTCTCAAATCTGCTTCTGCCTGGCTGGAGAACTACTGTGTCTCCTTGACTTGA 1365 0.4176 MPLRARTVTASLRRSLRCLHLSFCSFSLSKSQFSANCHEFLPWLERKAESAVSSSLFIGKSSYGRSLFASKTIQTGDCILKVPYRVQITADNLPPEIKSLIGEEVGNIAKLAIVILVEKKMGQGSEWYPYISHLPQQGEQHNTVFWNESELELIHPSTVYQETIDHKSQIEKDFLTIKRVFESFDVSFEDFTFKDFMHACTLVGSRAWGSTKGLALIPFADFLNHDGLSEAIVMSDDDKQCSEIIADRDYAPGEQVLIRYGKFSNATLLLDFGFSIPYNIYDQVKVQFDVPKHDPLHDMKLELLQRNIVPHPEDMEDLTYPVNTFSIKEVKSDRGKGKGLPQSLRALARVLSCATSQELYDLVEEAAQNDGRLARRPLKDINREIQAHLMLLSVFIQLIEERNAIIMSLGSCHSPLFCERLPVRRIMAQDLLHGELRILKSASAWLENYCVSLT 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4718g00007 454 SUPERFAMILY SET domain 37 279 IPR046341 -
Vium4718g00007 454 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 32 389 - -
Vium4718g00007 454 Gene3D - 277 450 IPR036464 -
Vium4718g00007 454 Pfam Rubisco LSMT substrate-binding 292 395 IPR015353 -
Vium4718g00007 454 Gene3D set domain protein methyltransferase, domain 1 33 274 - -
Vium4718g00007 454 Pfam SET domain 64 261 IPR001214 GO:0005515
Vium4718g00007 454 ProSiteProfiles SET domain profile. 46 261 IPR001214 GO:0005515
Vium4718g00007 454 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 33 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4718g00007 Vium-Chr4718 44996 51262 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium4718g00007 SET 3.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4718g00007 K19199 - gmx:100818002 692.189