LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4718g00006	ATGCCACTTCGAGCTCGCACAGTAACTGCAAGCTTGCGGCGGTCTCTTCGTTGTCTCCACCTTAGCTTCTGTTCTTTCTCTCTGTCAAAATCTCAGTTTTCTGCCAATTGTCACGAATTTTTGCCGTGGTTGGAGCGGAAAGCTGAATCTGCAGTTTCTTCCTCACTTTTCATCGGCAAATCTTCTTATGGAAGGTCTCTGTTTGCTTCCAAGACAATACAAACTGGAGATTGCATTTTAAAGGTTCCTTACAGAGTGCAAATTACTGCTGATAATCTTCCTCCTGAAATCAAATCTTTGATCGGTGAGGAAGTGGGAAATATTGCGAAACTTGCTATTGTTATTCTCGTTGAGAAGAAAATGGGTCAGGGTTCTGAATGGTATCCTTATATCAGCCATCTTCCACAGCAAGGGGAGCAACACAATACAGTATTTTGGAATGAAAGTGAGTTGGAGTTGATTCATCCAAGTACAGTTTATCAAGAAACTATTGACCATAAATCTCAAATTGAAAAGGATTTTTTGACAATCAAGCGTGTTTTTGAATCTTTCGATGTGAGTTTTGAAGATTTTACCTTCAAGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAAGGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCATGATGGACTTTCAGAAGCAATTGTAATGAGTGATGACGACAAACAATGCTCAGAAATTATTGCTGATCGTGACTATGCCCCTGGTGAACAGGTTAAGGTCCAGTTTGATGTACCTAAGCATGACCCTTTGCATGACATGAAGTTGGAACTCTTGCAACGAAACATTGTACCTCATCCTGAAGATATGGAGGACTTGACATATCCTGTGAATACCTTCAGTATCAAGGAGGTGAAGTCGGATAGAGGAAAAGGGAAGGGTCTTCCACAGTCACTTCGTGCGCTTGCTCGTGTTCTTTCTTGTGCCACATCTCAGGAACTTTACGATTTGGTCGAGGAAGCTGCTCAAAATGATGGAAGGCTGGCTAGGCGCCCTTTAAAGGATATCAACAGAGAGATCCAAGCACACCTGATGTTGTTATCAGTATTCATCCAATTAATTGAGGAGCGCAATGCGATTATTATGTCACTGGGTTCTTGTCATAGCCCTCTCTTTTGTGAAAGACTTCCTGTTAGAAGAATAATGGCTCAAGATCTCCTACATGGTGAGCTTCGCATTCTCAAATCTGCTTCTGCCTGGCTGGAGAACTACTGTGTCTCCTTGACTTGA	1281	0.4223	MPLRARTVTASLRRSLRCLHLSFCSFSLSKSQFSANCHEFLPWLERKAESAVSSSLFIGKSSYGRSLFASKTIQTGDCILKVPYRVQITADNLPPEIKSLIGEEVGNIAKLAIVILVEKKMGQGSEWYPYISHLPQQGEQHNTVFWNESELELIHPSTVYQETIDHKSQIEKDFLTIKRVFESFDVSFEDFTFKDFMHACTLVGSRAWGSTKGLALIPFADFLNHDGLSEAIVMSDDDKQCSEIIADRDYAPGEQVKVQFDVPKHDPLHDMKLELLQRNIVPHPEDMEDLTYPVNTFSIKEVKSDRGKGKGLPQSLRALARVLSCATSQELYDLVEEAAQNDGRLARRPLKDINREIQAHLMLLSVFIQLIEERNAIIMSLGSCHSPLFCERLPVRRIMAQDLLHGELRILKSASAWLENYCVSLT	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4718g00006	426	SUPERFAMILY	SET domain	37	261	IPR046341	-
	Vium4718g00006	426	Pfam	Rubisco LSMT substrate-binding	264	367	IPR015353	-
	Vium4718g00006	426	Pfam	SET domain	64	256	IPR001214	GO:0005515
	Vium4718g00006	426	Gene3D	set domain protein methyltransferase, domain 1	33	267	-	-
	Vium4718g00006	426	FunFam	Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic	33	267	-	-
	Vium4718g00006	426	PANTHER	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	32	360	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4718g00006	Vium-Chr4718	44996	51262	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Vium4718g00006		SET	3.4e-11	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4718g00006	K19199		-	gmx:100818002	622.854