Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4718g00005 ATGGATAATAATAAGGAGATGATGATGATGATGATGATGATGGGTGTGAAGAAGGAGGAGGATTATTCCATAGGGTCATCGTCCTTCCATTGCAATTATCCATTCCTTGATTTCTCTGATGACAAGGGCTCTTTAGGGTTTATGGAGTTGCTGGGTGTGCAAGAATACAGTCCTCTGCTTGATTTGCCTTTAGGGTCCAACATGGAAGTGCGTCAAACCTCTGATCATAAGGAACCACCTCAGACTAAGAAAGATTGGCCCGAGGTAACCAACCAGCAACCTGCGACTCCGAACTCGTCATCCATTTCCTCCGCGTCCAGTGAGGCTCTCAACGATGAACAAAAGAATAGAACTGTAGACCAAACACATGATGAGCACAAAAAGACAAAGGAACAGTTGAAGGCTAAGAAGACAAATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCGTGTAATGTGAAGAAACGCGTAGAGCGATCTTTTAGCGACCCAAGCATTGTGGTGACAACCTACGAAGGTCAACACATTCATCCAAGCCCGGTTATGGGTCGCTCCAACAACTTTGGTTCGCTAATGTCTGGATCTGAGAACTACATGTCCCAATATTATCAGCAGCACCATCAACAACAGCTCCATGTCGATGCATTGTCTTCTCTGGGTTTCCTCTCTCCAAAGAATGTCACATTTCCTCAACAGACAGCGTTGTTGAGTGACTATGGCCGTCTTCAAGATGTTGTTCCTTCACAACAAATGTTCAAACAAGACTAG 885 0.452 MDNNKEMMMMMMMMGVKKEEDYSIGSSSFHCNYPFLDFSDDKGSLGFMELLGVQEYSPLLDLPLGSNMEVRQTSDHKEPPQTKKDWPEVTNQQPATPNSSSISSASSEALNDEQKNRTVDQTHDEHKKTKEQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFSDPSIVVTTYEGQHIHPSPVMGRSNNFGSLMSGSENYMSQYYQQHHQQQLHVDALSSLGFLSPKNVTFPQQTALLSDYGRLQDVVPSQQMFKQD 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4718g00005 294 FunFam WRKY transcription factor 57 145 219 - -
Vium4718g00005 294 Coils Coil 123 143 - -
Vium4718g00005 294 ProSiteProfiles WRKY domain profile. 154 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4718g00005 294 SMART WRKY_cls 159 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4718g00005 294 MobiDBLite consensus disorder prediction 70 145 - -
Vium4718g00005 294 SUPERFAMILY WRKY DNA-binding domain 151 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4718g00005 294 Pfam WRKY DNA -binding domain 160 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4718g00005 294 PIRSF WRKY_txn_fact_IIc 1 294 IPR017396 GO:0003700
Vium4718g00005 294 Gene3D WRKY domain 144 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4718g00005 294 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 72 247 IPR044810 GO:0003700
Vium4718g00005 294 MobiDBLite consensus disorder prediction 85 112 - -
Vium4718g00005 294 MobiDBLite consensus disorder prediction 113 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4718g00005 Vium-Chr4718 25179 27089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4718g00005 21 234 WRKY Transcription Factor Family AT2G47260 50.820 2.03e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium4718g00005 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4718g00005 - - vra:106757666 541.191