Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium4718g00004 | ATGGAGATTCCAAAGGAGCAGATGGAGCAGAGGCTCAATTTCAACGGAGACCCTTCAAACCCTCATTCTCACGACAATGGCAACGGCTTCAACCACTTCCTACCCCTCGATTCAGGATACGCTCTTAACCATTCCGTTCCTCGCCCTCTCCGCAAACGCCCCTGGCACCACTCCAACCAAGGAACTTCTCCAGATCAAGTGGACAGTGCGAATAATGTGAAAGTTTATGTTGCTCCTGTTCCGAGAACTGCCACGGAGGCGGAGATCCGTCCTGTATTTGAAGAACATGGAACTATTATTGAGGTTGTTCTTTTAAAAGACAAGAGAACAGGTGTACGGCAAGGAAGTTGTTTTGTGAAATATGCAACATTTGATGGAGCTGACAGGGCTATCAAGGCTTTAAACAATCAATATACATTTGTTGGGGAATCATATCCTGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGTCTTGGGGTTCGAGGGTTTTGCCGTAACATGGAAAAGAAAGATCCTTTAGAAGGGGTTCGAGGGTTTTGCCGTAACATGGAAAAGAAAGATCCTTTAGAAGTAGTGGCAGATAAAGTTTTTGTTAGTTGCTTCAACAAAGAGGCTTCAAAAAAGGAAATTGAAGAAATATTTTCCCCTTATGGACATGTAGAAGATATCTTCATTGCAACCAGTCGTGGATATGCTTTTGTCAAATTTTCTAACCGAGAAATGGCATTAGCTGCAATCAAAGGACTGAATAGAACCTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAGACCTAGAACAGGAGAGCCCAGGAGCAACTCTGTATCTGTGAATGCAAATTTTGGACCCTGTTCTCAGGAACCAGCAGTATGGCCACTACCAAATTTTGGTGATCCCAATTGTGGAGGAAGTATGTTGCCTATTGCCCCACATCATTCCTCAATGTCACACCCACAAGTTAATACTCATATGCAAAACTGGGAACCTGGTGCTACTGTGGTACAACATCCATTTCCCCCACAACAATTGCATTCACAGTTGGGTTCAATGCCTTTCGGGTCAATTCAAGCTCCAAAATTGCCTTCTCAGACTCAGCCATTTATTACTGAGGCGCAGAGACAATCACATCCAGCAGATTCATTAGTTCAAAATATAGAGCAGCACCTTAGTTCACAGCTGGCTAGTCAGACTGGAAGCAACCCTAGTACAGCTGCTGGCAATATCCCACCTGATATGCCTTCAAGTCCCCAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTGTTAAGTACTACTACAACTGTGTCACTTGTGAAAGCAGATGGGAGAAGCCTGAAGAGTATGCCTTGTACGAGAAAGAATCTCAGAAGCAGCCGGAGCTGGAGAATAATTGCTGCAGTCTTTCACAATTGTCGTCATGTTCCTCCCAACAAGTTGCTGAAAAACACCAGGAAACAAATCATGACCGCAGACAGTCAAATACAAGTCCTGTTGTTGCGTAG | 1545 | 0.4414 | MEIPKEQMEQRLNFNGDPSNPHSHDNGNGFNHFLPLDSGYALNHSVPRPLRKRPWHHSNQGTSPDQVDSANNVKVYVAPVPRTATEAEIRPVFEEHGTIIEVVLLKDKRTGVRQGSCFVKYATFDGADRAIKALNNQYTFVGESYPVVVKFADRELERLGVRGFCRNMEKKDPLEGVRGFCRNMEKKDPLEVVADKVFVSCFNKEASKKEIEEIFSPYGHVEDIFIATSRGYAFVKFSNREMALAAIKGLNRTFTMRGCDHPLIVRFADPKRPRTGEPRSNSVSVNANFGPCSQEPAVWPLPNFGDPNCGGSMLPIAPHHSSMSHPQVNTHMQNWEPGATVVQHPFPPQQLHSQLGSMPFGSIQAPKLPSQTQPFITEAQRQSHPADSLVQNIEQHLSSQLASQTGSNPSTAAGNIPPDMPSSPQDEDFPECDWSEHYCPDGVKYYYNCVTCESRWEKPEEYALYEKESQKQPELENNCCSLSQLSSCSSQQVAEKHQETNHDRRQSNTSPVVA | 514 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium4718g00004 | 514 | Gene3D | - | 60 | 159 | IPR012677 | - | |
| Vium4718g00004 | 514 | MobiDBLite | consensus disorder prediction | 399 | 418 | - | - | |
| Vium4718g00004 | 514 | MobiDBLite | consensus disorder prediction | 491 | 514 | - | - | |
| Vium4718g00004 | 514 | SUPERFAMILY | RNA-binding domain, RBD | 36 | 160 | IPR035979 | GO:0003676 | |
| Vium4718g00004 | 514 | Gene3D | - | 419 | 479 | - | - | |
| Vium4718g00004 | 514 | SMART | rrm1_1 | 74 | 150 | IPR000504 | GO:0003723 | |
| Vium4718g00004 | 514 | SMART | rrm1_1 | 196 | 266 | IPR000504 | GO:0003723 | |
| Vium4718g00004 | 514 | PANTHER | RNA BINDING PROTEIN | 48 | 394 | - | - | |
| Vium4718g00004 | 514 | CDD | WW | 432 | 461 | IPR001202 | GO:0005515 | |
| Vium4718g00004 | 514 | ProSitePatterns | WW/rsp5/WWP domain signature. | 434 | 459 | IPR001202 | GO:0005515 | |
| Vium4718g00004 | 514 | Gene3D | - | 191 | 276 | IPR012677 | - | |
| Vium4718g00004 | 514 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 73 | 154 | IPR000504 | GO:0003723 | |
| Vium4718g00004 | 514 | SMART | ww_5 | 429 | 461 | IPR001202 | GO:0005515 | |
| Vium4718g00004 | 514 | MobiDBLite | consensus disorder prediction | 12 | 27 | - | - | |
| Vium4718g00004 | 514 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 434 | 461 | IPR001202 | GO:0005515 | |
| Vium4718g00004 | 514 | SUPERFAMILY | WW domain | 433 | 465 | IPR036020 | GO:0005515 | |
| Vium4718g00004 | 514 | MobiDBLite | consensus disorder prediction | 399 | 429 | - | - | |
| Vium4718g00004 | 514 | MobiDBLite | consensus disorder prediction | 45 | 70 | - | - | |
| Vium4718g00004 | 514 | FunFam | Flowering time control protein FCA isoform B | 58 | 159 | - | - | |
| Vium4718g00004 | 514 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 195 | 270 | IPR000504 | GO:0003723 | |
| Vium4718g00004 | 514 | MobiDBLite | consensus disorder prediction | 56 | 70 | - | - | |
| Vium4718g00004 | 514 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Vium4718g00004 | 514 | SUPERFAMILY | RNA-binding domain, RBD | 194 | 281 | IPR035979 | GO:0003676 | |
| Vium4718g00004 | 514 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 75 | 138 | IPR000504 | GO:0003723 | |
| Vium4718g00004 | 514 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 197 | 255 | IPR000504 | GO:0003723 | |
| Vium4718g00004 | 514 | Pfam | WW domain | 432 | 459 | IPR001202 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium4718g00004 | Vium-Chr4718 | 15023 | 23511 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium4718g00004 | 30 | 320 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 26.246 | 1.58e-12 | 68.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium4718g00004 | K13207 | - | gmx:100776162 | 785.793 |