Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4718g00003 ATGGAGATTCCAAAGGAGCAGATGGAGCAGAGGCTCAATTTCAACGGAGACCCTTCAAACCCTCATTCTCACGACAATGGCAACGGCTTCAACCACTTCCTACCCCTCGATTCAGGATACGCTCTTAACCATTCCGTTCCTCGCCCTCTCCGCAAACGCCCCTGGCACCACTCCAACCAAGGAACTTCTCCAGATCAAGTGGACAGTGCGAATAATGTGAAAGTTTATGTTGCTCCTGTTCCGAGAACTGCCACGGAGGCGGAGATCCGTCCTGTATTTGAAGAACATGGAACTATTATTGAGGTTGTTCTTTTAAAAGACAAGAGAACAGGTGTACGGCAAGGAAGTTGTTTTGTGAAATATGCAACATTTGATGGAGCTGACAGGGCTATCAAGGCTTTAAACAATCAATATACATTTGTTGGGGAATCATATCCTGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGTCTTGGGGTTCGAGGGTTTTGCCGTAACATGGAAAAGAAAGATCCTTTAGAAGTAGTGGCAGATAAAGTTTTTGTTAGTTGCTTCAACAAAGAGGCTTCAAAAAAGGAAATTGAAGAAATATTTTCCCCTTATGGACATGTAGAAGATATCTTCATTGCAACCAGTCGTGGATATGCTTTTGTCAAATTTTCTAACCGAGAAATGGCATTAGCTGCAATCAAAGGACTGAATAGAACCTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAGACCTAGAACAGGAGAGCCCAGGAGCAACTCTGTATCTGTGAATGCAAATTTTGGACCCTGTTCTCAGGAACCAGCAGTATGGCCACTACCAAATTTTGGTGATCCCAATTGTGGAGGAAGTATGTTGCCTATTGCCCCACATCATTCCTCAATGTCACACCCACAAGTTAATACTCATATGCAAAACTGGGAACCTGGTGCTACTGTGGTACAACATCCATTTCCCCCACAACAATTGCATTCACAGTTGGGTTCAATGCCTTTCGGGTCAATTCAAGCTCCAAAATTGCCTTCTCAGACTCAGCCATTTATTACTGAGGCGCAGAGACAATCACATCCAGCAGATTCATTAGTTCAAAATATAGAGCAGCACCTTAGTTCACAGCTGGCTAGTCAGACTGGAAGCAACCCTAGTACAGCTGCTGGCAATATCCCACCTGATATGCCTTCAAGTCCCCAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTGTTAAGTACTACTACAACTGTGTCACTTGTGAAAGCAGATGGGAGAAGCCTGAAGAGTATGCCTTGTACGAGAAAGAATCTCAGAAGCAGCCGGAGCTGGAGAATAATTGCTGCAGTCTTTCACAATTGTCGTCATGTTCCTCCCAACAAGTTGCTGAAAAACACCAGGAAACAAATCATGACCGCAGACAGTCAAATACAAGTCCTGTTGTTGCGTAG 1497 0.4415 MEIPKEQMEQRLNFNGDPSNPHSHDNGNGFNHFLPLDSGYALNHSVPRPLRKRPWHHSNQGTSPDQVDSANNVKVYVAPVPRTATEAEIRPVFEEHGTIIEVVLLKDKRTGVRQGSCFVKYATFDGADRAIKALNNQYTFVGESYPVVVKFADRELERLGVRGFCRNMEKKDPLEVVADKVFVSCFNKEASKKEIEEIFSPYGHVEDIFIATSRGYAFVKFSNREMALAAIKGLNRTFTMRGCDHPLIVRFADPKRPRTGEPRSNSVSVNANFGPCSQEPAVWPLPNFGDPNCGGSMLPIAPHHSSMSHPQVNTHMQNWEPGATVVQHPFPPQQLHSQLGSMPFGSIQAPKLPSQTQPFITEAQRQSHPADSLVQNIEQHLSSQLASQTGSNPSTAAGNIPPDMPSSPQDEDFPECDWSEHYCPDGVKYYYNCVTCESRWEKPEEYALYEKESQKQPELENNCCSLSQLSSCSSQQVAEKHQETNHDRRQSNTSPVVA 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4718g00003 498 Gene3D - 175 260 IPR012677 -
Vium4718g00003 498 Gene3D - 403 463 - -
Vium4718g00003 498 CDD WW 416 445 IPR001202 GO:0005515
Vium4718g00003 498 MobiDBLite consensus disorder prediction 383 402 - -
Vium4718g00003 498 Gene3D - 60 159 IPR012677 -
Vium4718g00003 498 Pfam WW domain 416 443 IPR001202 GO:0005515
Vium4718g00003 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 138 IPR000504 GO:0003723
Vium4718g00003 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 239 IPR000504 GO:0003723
Vium4718g00003 498 SUPERFAMILY RNA-binding domain, RBD 36 161 IPR035979 GO:0003676
Vium4718g00003 498 FunFam Flowering time control protein FCA isoform B 58 159 - -
Vium4718g00003 498 MobiDBLite consensus disorder prediction 475 498 - -
Vium4718g00003 498 SUPERFAMILY WW domain 417 449 IPR036020 GO:0005515
Vium4718g00003 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 154 IPR000504 GO:0003723
Vium4718g00003 498 SMART rrm1_1 74 150 IPR000504 GO:0003723
Vium4718g00003 498 SMART rrm1_1 180 250 IPR000504 GO:0003723
Vium4718g00003 498 MobiDBLite consensus disorder prediction 12 27 - -
Vium4718g00003 498 ProSiteProfiles WW/rsp5/WWP domain profile. 418 445 IPR001202 GO:0005515
Vium4718g00003 498 PANTHER RNA BINDING PROTEIN 48 378 - -
Vium4718g00003 498 MobiDBLite consensus disorder prediction 383 413 - -
Vium4718g00003 498 SMART ww_5 413 445 IPR001202 GO:0005515
Vium4718g00003 498 MobiDBLite consensus disorder prediction 45 70 - -
Vium4718g00003 498 SUPERFAMILY RNA-binding domain, RBD 178 265 IPR035979 GO:0003676
Vium4718g00003 498 ProSitePatterns WW/rsp5/WWP domain signature. 418 443 IPR001202 GO:0005515
Vium4718g00003 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 254 IPR000504 GO:0003723
Vium4718g00003 498 MobiDBLite consensus disorder prediction 56 70 - -
Vium4718g00003 498 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4718g00003 Vium-Chr4718 15023 23511 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4718g00003 30 304 Eukaryotic Initiation Factors Gene Family AT1G71770 26.316 2.24e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4718g00003 K13207 - gmx:100776162 796.193