Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4718g00002 ATGGAGATTCCAAAGGAGCAGATGGAGCAGAGGCTCAATTTCAACGGAGACCCTTCAAACCCTCATTCTCACGACAATGGCAACGGCTTCAACCACTTCCTACCCCTCGATTCAGGATACGCTCTTAACCATTCCGTTCCTCGCCCTCTCCGCAAACGCCCCTGGCACCACTCCAACCAAGGAACTTCTCCAGATCAAGTGGACAGTGCGAATAATGTGAAAGTTTATGTTGCTCCTGTTCCGAGAACTGCCACGGAGGCGGAGATCCGTCCTGTATTTGAAGAACATGGAACTATTATTGAGGTTGTTCTTTTAAAAGACAAGAGAACAGGTGTACGGCAAGGAAGTTGTTTTGTGAAATATGCAACATTTGATGGAGCTGACAGGGCTATCAAGGCTTTAAACAATCAATATACATTTGTTGGGGAATCATATCCTGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGTCTTGGGGTTCGAGGGTTTTGCCGTAACATGGAAAAGAAAGATCCTTTAGAAGGGGTTCGAGGGTTTTGCCGTAACATGGAAAAGAAAGATCCTTTAGAAGGGGTTCGAGGGTTTTGCCGTAACATGGAAAAGAAAGATCCTTTAGAAGTAGTGGCAGATAAAGTTTTTGTTAGTTGCTTCAACAAAGAGGCTTCAAAAAAGGAAATTGAAGAAATATTTTCCCCTTATGGACATGTAGAAGATATCTTCATTGCAACCAGTCGTGGATATGCTTTTGTCAAATTTTCTAACCGAGAAATGGCATTAGCTGCAATCAAAGGACTGAATAGAACCTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAGACCTAGAACAGGAGAGCCCAGGAGCAACTCTGTATCTGTGAATGCAAATTTTGGACCCTGTTCTCAGGAACCAGCAGTATGGCCACTACCAAATTTTGGTGATCCCAATTGTGGAGGAAGTATGTTGCCTATTGCCCCACATCATTCCTCAATGTCACACCCACAAGTTAATACTCATATGCAAAACTGGGAACCTGGTGCTACTGTGGTACAACATCCATTTCCCCCACAACAATTGCATTCACAGTTGGGTTCAATGCCTTTCGGGTCAATTCAAGCTCCAAAATTGCCTTCTCAGACTCAGCCATTTATTACTGAGGCGCAGAGACAATCACATCCAGCAGATTCATTAGTTCAAAATATAGAGCAGCACCTTAGTTCACAGCTGGCTAGTCAGACTGGAAGCAACCCTAGTACAGCTGCTGGCAATATCCCACCTGATATGCCTTCAAGTCCCCAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTGTTAAGTACTACTACAACTGTGTCACTTGTGAAAGCAGATGGGAGAAGCCTGAAGAGTATGCCTTGTACGAGAAAGAATCTCAGAAGCAGCCGGAGCTGGAGAATAATTGCTGCAGTCTTTCACAATTGTCGTCATGTTCCTCCCAACAAGTTGCTGAAAAACACCAGGAAACAAATCATGACCGCAGACAGTCAAATACAAGTCCTGTTGTTGCGTAG 1593 0.4413 MEIPKEQMEQRLNFNGDPSNPHSHDNGNGFNHFLPLDSGYALNHSVPRPLRKRPWHHSNQGTSPDQVDSANNVKVYVAPVPRTATEAEIRPVFEEHGTIIEVVLLKDKRTGVRQGSCFVKYATFDGADRAIKALNNQYTFVGESYPVVVKFADRELERLGVRGFCRNMEKKDPLEGVRGFCRNMEKKDPLEGVRGFCRNMEKKDPLEVVADKVFVSCFNKEASKKEIEEIFSPYGHVEDIFIATSRGYAFVKFSNREMALAAIKGLNRTFTMRGCDHPLIVRFADPKRPRTGEPRSNSVSVNANFGPCSQEPAVWPLPNFGDPNCGGSMLPIAPHHSSMSHPQVNTHMQNWEPGATVVQHPFPPQQLHSQLGSMPFGSIQAPKLPSQTQPFITEAQRQSHPADSLVQNIEQHLSSQLASQTGSNPSTAAGNIPPDMPSSPQDEDFPECDWSEHYCPDGVKYYYNCVTCESRWEKPEEYALYEKESQKQPELENNCCSLSQLSSCSSQQVAEKHQETNHDRRQSNTSPVVA 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4718g00002 530 Gene3D - 435 495 - -
Vium4718g00002 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 271 IPR000504 GO:0003723
Vium4718g00002 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 138 IPR000504 GO:0003723
Vium4718g00002 530 SUPERFAMILY RNA-binding domain, RBD 210 297 IPR035979 GO:0003676
Vium4718g00002 530 SMART ww_5 445 477 IPR001202 GO:0005515
Vium4718g00002 530 PANTHER RNA BINDING PROTEIN 48 410 - -
Vium4718g00002 530 MobiDBLite consensus disorder prediction 415 434 - -
Vium4718g00002 530 MobiDBLite consensus disorder prediction 507 530 - -
Vium4718g00002 530 CDD WW 448 477 IPR001202 GO:0005515
Vium4718g00002 530 Gene3D - 207 292 IPR012677 -
Vium4718g00002 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 154 IPR000504 GO:0003723
Vium4718g00002 530 MobiDBLite consensus disorder prediction 12 27 - -
Vium4718g00002 530 SMART rrm1_1 74 150 IPR000504 GO:0003723
Vium4718g00002 530 SMART rrm1_1 212 282 IPR000504 GO:0003723
Vium4718g00002 530 MobiDBLite consensus disorder prediction 415 445 - -
Vium4718g00002 530 Gene3D - 60 159 IPR012677 -
Vium4718g00002 530 FunFam Flowering time control protein FCA isoform B 58 159 - -
Vium4718g00002 530 ProSiteProfiles WW/rsp5/WWP domain profile. 450 477 IPR001202 GO:0005515
Vium4718g00002 530 MobiDBLite consensus disorder prediction 45 70 - -
Vium4718g00002 530 SUPERFAMILY WW domain 449 481 IPR036020 GO:0005515
Vium4718g00002 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 286 IPR000504 GO:0003723
Vium4718g00002 530 Pfam WW domain 448 475 IPR001202 GO:0005515
Vium4718g00002 530 MobiDBLite consensus disorder prediction 56 70 - -
Vium4718g00002 530 MobiDBLite consensus disorder prediction 1 30 - -
Vium4718g00002 530 SUPERFAMILY RNA-binding domain, RBD 36 160 IPR035979 GO:0003676
Vium4718g00002 530 ProSitePatterns WW/rsp5/WWP domain signature. 450 475 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4718g00002 Vium-Chr4718 15023 23511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4718g00002 30 336 Eukaryotic Initiation Factors Gene Family AT1G71770 25.237 3.82e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4718g00002 K13207 - gmx:100776162 775.393