Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00033 ATGGTGTTTGAACATGTTCCGATTCCACGGCATACACAGGAAAATCACAAAAGGTGTCGTGTGGGGAATCAAGTGGTAGAGTTGATGGGGCATTTTTCCTCGATGTTCAATGGGTTGGCACGGTCGTTTTCAATGAAGAAAGGAAGAAAGAATGTGAAATGCGAAGGGAGGGAAGCCGCCGAAGCAATGGCAAAGGAGGCTAAGAAGAATGACATGATGCGGTGTAGCTCTGGCATAGTTCATGTCTATGGTTCAAACAACTTTGCCTCCGTATTCTCCAAAAGAGGTCAGAAAGGAGTGAACCAAGATTGCTGCATAGTGTGGGAGGAATTTGGATGCCAAGAGGACACGATCTTCTGTGGGATTTTTGATGGGCATGGACCATGGGGTCACTTTGTGGCCAAAAGAGTAAGAGAGTCAATGCCACCATCTTTGCTATGCAACTGGCAGGAGACGCTGGCCCAAACTTCAGTTGATCCCGGTGTTGATGTAGAGGAAGGAAAAAGGCAACTTTACCGATTCAACGTATGGAAGCACTCTTACTTGAAGACATGTGCGGCCATTGACGAAGAACTGAAGCAGCAGCGCAAGATAGACTCGTTTTACAGCGGAACAACGGCCCTATCAATTGTTAGACAGGGTGAACTCATTGTCGTAGCAAATGTTGGTGATTCTCGTGCTGTGTTGGCTACAACATCAGATGAAGGAAGTTTGGTAGCGGTTCAACTAACAGTTGATTTCAAGCCCAATTTACCCCAAGAAGCAGAGAGAATAATTCAGTGCCAGGGGCGTGTGTTCTGCCTAGAGGACGAGCCAGGGGTGCATAGGGTATGGTTGCCTGATGCAGAGTCTCCAGGACTAGCCATGTCTAGGGCCTTTGGTGACTACTGCATTAAAGGGCATGGCCTAATTTCTGTGCCTGAGGTAACCCACAGAAATATAAGTGTTAGAGACCAGTTTGTGGTGCTAGCCACTGATGGGGTTTGGGATGTAATATCTAACAAAGAAGCAGTGGAAATTGTATCTTCAACAGCAGATAAAGCTAAGGCAGCTAAAAAGTTGGTAGAGTGTGCGGAACATGCATGGAAACGCAAGAGACGGGGCATTGCCGTGGATGACATTTCAGCCATTTGTCTTTTCTTTCACTCTTCCTTTTAA 1158 0.4655 MVFEHVPIPRHTQENHKRCRVGNQVVELMGHFSSMFNGLARSFSMKKGRKNVKCEGREAAEAMAKEAKKNDMMRCSSGIVHVYGSNNFASVFSKRGQKGVNQDCCIVWEEFGCQEDTIFCGIFDGHGPWGHFVAKRVRESMPPSLLCNWQETLAQTSVDPGVDVEEGKRQLYRFNVWKHSYLKTCAAIDEELKQQRKIDSFYSGTTALSIVRQGELIVVANVGDSRAVLATTSDEGSLVAVQLTVDFKPNLPQEAERIIQCQGRVFCLEDEPGVHRVWLPDAESPGLAMSRAFGDYCIKGHGLISVPEVTHRNISVRDQFVVLATDGVWDVISNKEAVEIVSSTADKAKAAKKLVECAEHAWKRKRRGIAVDDISAICLFFHSSF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00033 385 ProSiteProfiles PPM-type phosphatase domain profile. 88 381 IPR001932 -
Vium4717g00033 385 CDD PP2Cc 87 381 IPR001932 -
Vium4717g00033 385 Pfam Protein phosphatase 2C 103 357 IPR001932 -
Vium4717g00033 385 Gene3D - 82 383 IPR036457 -
Vium4717g00033 385 PANTHER PROTEIN PHOSPHATASE 65 379 IPR015655 GO:0004722|GO:0006470
Vium4717g00033 385 FunFam Probable protein phosphatase 2C 34 79 383 - -
Vium4717g00033 385 SMART PP2C_4 79 379 IPR001932 -
Vium4717g00033 385 SUPERFAMILY PP2C-like 79 382 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4717g00033 Vium-Chr4717 267524 270371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00033 29 382 PP2C-type Phosphatase Gene Family AT3G05640 71.910 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00033 - - var:108327803 756.133