Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00032 ATGGGGCATTTTTCCTCGATGTTCAATGGGTTGGCACGGTCGTTTTCAATGAAGAAAGGAAGAAAGAATGTGAAATGCGAAGGGAGGGAAGCCGCCGAAGCAATGGCAAAGGAGGCTAAGAAGAATGACATGATGCGGTGTAGCTCTGGCATAGTTCATGTCTATGGTTCAAACAACTTTGCCTCCGTATTCTCCAAAAGAGGTCAGAAAGGAGTGAACCAAGATTGCTGCATAGTGTGGGAGGAATTTGGATGCCAAGAGGACACGATCTTCTGTGGGATTTTTGATGGGCATGGACCATGGGGTCACTTTGTGGCCAAAAGAGTAAGAGAGTCAATGCCACCATCTTTGCTATGCAACTGGCAGGAGACGCTGGCCCAAACTTCAGTTGATCCCGGTGTTGATGTAGAGGAAGGAAAAAGGCAACTTTACCGATTCAACGTATGGAAGCACTCTTACTTGAAGACATGTGCGGCCATTGACGAAGAACTGAAGCAGCAGCGCAAGATAGACTCGTTTTACAGCGGAACAACGGCCCTATCAATTGTTAGACAGGGTGAACTCATTGTCGTAGCAAATGTTGGTGATTCTCGTGCTGTGTTGGCTACAACATCAGATGAAGGAAGTTTGGTAGCGGTTCAACTAACAGTTGATTTCAAGCCCAATTTACCCCAAGAAGCAGAGAGAATAATTCAGTGCCAGGGGCGTGTGTTCTGCCTAGAGGACGAGCCAGGGGTGCATAGGGTATGGTTGCCTGATGCAGAGTCTCCAGGACTAGCCATGTCTAGGGCCTTTGGTGACTACTGCATTAAAGGGCATGGCCTAATTTCTGTGCCTGAGGTAACCCACAGAAATATAAGTGTTAGAGACCAGTTTGTGGTGCTAGCCACTGATGGGGTTTGGGATGTAATATCTAACAAAGAAGCAGTGGAAATTGTATCTTCAACAGCAGATAAAGCTAAGGCAGCTAAAAAGTTGGTAGAGTGTGCGGAACATGCATGGAAACGCAAGAGACGGGGCATTGCCGTGGATGACATTTCAGCCATTTGTCTTTTCTTTCACTCTTCCTTTTAA 1074 0.4665 MGHFSSMFNGLARSFSMKKGRKNVKCEGREAAEAMAKEAKKNDMMRCSSGIVHVYGSNNFASVFSKRGQKGVNQDCCIVWEEFGCQEDTIFCGIFDGHGPWGHFVAKRVRESMPPSLLCNWQETLAQTSVDPGVDVEEGKRQLYRFNVWKHSYLKTCAAIDEELKQQRKIDSFYSGTTALSIVRQGELIVVANVGDSRAVLATTSDEGSLVAVQLTVDFKPNLPQEAERIIQCQGRVFCLEDEPGVHRVWLPDAESPGLAMSRAFGDYCIKGHGLISVPEVTHRNISVRDQFVVLATDGVWDVISNKEAVEIVSSTADKAKAAKKLVECAEHAWKRKRRGIAVDDISAICLFFHSSF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00032 357 CDD PP2Cc 59 353 IPR001932 -
Vium4717g00032 357 Gene3D - 54 355 IPR036457 -
Vium4717g00032 357 SMART PP2C_4 51 351 IPR001932 -
Vium4717g00032 357 FunFam Probable protein phosphatase 2C 34 51 355 - -
Vium4717g00032 357 ProSiteProfiles PPM-type phosphatase domain profile. 60 353 IPR001932 -
Vium4717g00032 357 SUPERFAMILY PP2C-like 51 354 IPR036457 -
Vium4717g00032 357 Pfam Protein phosphatase 2C 75 329 IPR001932 -
Vium4717g00032 357 PANTHER PROTEIN PHOSPHATASE 39 351 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4717g00032 Vium-Chr4717 267524 270640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00032 1 354 PP2C-type Phosphatase Gene Family AT3G05640 72.269 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00032 - - var:108327803 711.835