Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00029 ATGAGTAGGACTGAATTATCGAGGACGAAGTCATCGCCGGTTCCATTGGGAACTCTGATTGGCCGTGAGATTCGAAATGGAAGAGTTGAAAAACCTTTCGTGAAGTATGGACAATCTGGATTGGCCAAGAAAGGAGAAGATTACTTTCTGATCAAGACGGATTGCCTCAGGGTTCCGGGGGATGCATCAACGGCGTTTTCTGTCTTTGCGATCTTTGATGGGCATAACGGGATATCTGCTGCTATTTTTGCAAAGGAAAGCTTGCTAAGTAATGTTTTGAGTGCAATACCCCAAGATATTAGCAGGGATGCATGGCTTCAGGCCCTTCCACGCGCACTGGTTGTTGGCTTTGTGAAGACTGACATAGAGTTTCAGCAAAAGGGGGAAACTTCCGGAACGACAGCTACATTTGTTTTAGTTGATGGATGGACTATAACTGTCGCATCTGTTGGGGATTCACGCTGCATATTAGATACTCAGGGAGGTGTTGTTTCTCTCTTGACAGTTGATCACAGATTGGAAGAGAATGCGGAGGAAAGGGAGCGTGTGACTGCCAGTGGTGGTGAAGTAGGAAGACTCAATGTATTTGGAGGCAACGAGGTTGGGCCTCTTCGCTGCTGGCCTGGTGGATTGTGCTTATCTAGATCAATTGGTGACACAGACGTTGGGGAATTTATTGTGCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGTGGAAGACTTATTATAGCCTCTGATGGTATTTGGGATGCTTTATCATCTGATATGGCTGCCCAGTCATGTCGGGGTCTGCCTGCAGATCTTGCTGCAAAACTAGTGGTTAAGGAAGCTCTAAGGTCAAGAGGCCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCTGACCTTCCTGTATTACCCCCAACTCCAAGAAAGAAACATAATATGCTAACTTCGCTTCTCTTTTTTGGGAAAAAGTCTGAGAACACAGTGAACAAAGGTACCAATAAGCTTTCTGCAGTTGGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACTGAAAGGCTGGGTAAGGATTTTCCGCTTAATAAGAATTCTGGCATTTTCCGCTGTGCGGTTTGCCAAGTGGACCAACCCCCTGGTGATGGCTTGTCTGTGAATTCTGGACCTTTTTTCTCTCCTGCATCGAACCCATGGGAAGGCCCATTCCTCTGCACAAATTGTCGGAAGAAGAAAGATGCCATGGAAGGAAAAAGGCCCAGCAAAACCACCGTTATAGCATAG 1290 0.4574 MSRTELSRTKSSPVPLGTLIGREIRNGRVEKPFVKYGQSGLAKKGEDYFLIKTDCLRVPGDASTAFSVFAIFDGHNGISAAIFAKESLLSNVLSAIPQDISRDAWLQALPRALVVGFVKTDIEFQQKGETSGTTATFVLVDGWTITVASVGDSRCILDTQGGVVSLLTVDHRLEENAEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDMAAQSCRGLPADLAAKLVVKEALRSRGLKDDTTCLVVDIIPSDLPVLPPTPRKKHNMLTSLLFFGKKSENTVNKGTNKLSAVGVVEELFEEGSAMLTERLGKDFPLNKNSGIFRCAVCQVDQPPGDGLSVNSGPFFSPASNPWEGPFLCTNCRKKKDAMEGKRPSKTTVIA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00029 429 ProSiteProfiles PPM-type phosphatase domain profile. 32 297 IPR001932 -
Vium4717g00029 429 SMART PP2C_4 23 295 IPR001932 -
Vium4717g00029 429 Pfam Protein phosphatase 2C 63 280 IPR001932 -
Vium4717g00029 429 FunFam probable protein phosphatase 2C 5 35 302 - -
Vium4717g00029 429 SUPERFAMILY PP2C-like 39 297 IPR036457 -
Vium4717g00029 429 Gene3D - 34 301 IPR036457 -
Vium4717g00029 429 PANTHER PROTEIN PHOSPHATASE 46 296 IPR015655 GO:0004722|GO:0006470
Vium4717g00029 429 CDD PP2Cc 43 297 IPR001932 -
Vium4717g00029 429 SMART PP2C_SIG_2 50 297 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4717g00029 Vium-Chr4717 242671 246109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00029 1 427 PP2C-type Phosphatase Gene Family AT1G09160 77.752 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00029 - - gmx:100807886 820.461