Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00028 ATGGCAACTGAACCAGTTTTAACATTCTCTTTGGCTTCTGTGGTTGAAGAGGTTCTTCAACAGCATGCTGGTCGTTTAGACGCAAACTCGGCATCCAGAAAAACTGAAGAAACCTCCTTGAGAAGGTATGAAGCAGCTGGTTGGCTACGGAAAACAGTTGGAGTTGTTCGAGGGAAAGACTTGCCAGCTGAACCTTCTGAAGGAGATTTCAGGATTGGATTGCGTAGTGGGATTATCCTATGTAGTGTTCTTAACAAAATTCAACCTGGAACAGTGTCGAAGGTATTTGAAAAACCTTGTGATTCTGTTATTATTCCTGATGGAACAACATCTGCATATCAGTACCAAGAAAATATAAAGAATTTTCTTGTGGCTGTGGAGGAAATGGGGCTTCCTACCTTCGAAGTTTCTGATTTGGAACAGGGAGGAAACTCTGAGAGGGTAGTGGATTGTGTTCTAGAGCTAAAGTCTTATGCCGAACGAAAAGTTGGAGGAAGTGCATCTGGGAAATATAGTGGGGTTGCGAATGCAAAGCCACCTATCTCTGCGAAACGAATTACGAGGAAAAACTCAGAACCATTCATGAAGTCTATGAGTCCTTTGCCATCAGGGGATAGAGATGGTGGTTATATGAGTGATCCCGGACAAGATCGAAGCGAAAGGGTTAGGAAGCTTTATTTGGAATCCTTGCTTAGCAAAGTCATGGAGGAATGTGAACATCACATGCAAATTCGATGTAAAATGTATAAAACAACTAGGGAAGATACAGCACCGTGTGAAACTGAATGTTCAATTTCAGAAGCTGCTTCTATTAATGAAACGGTGAAAGAAAAGGAAGATGAACATGCTGTACAAGAAGAGCATGATCTACAAGATAAACATGATGTAAAAGATGAACATGATATACGAGATGAACATGATGTAAAAGTTGAGCGTGACATTCAAGATGAACACAGGGAAGAAAATAAACGAGAGGAAAGTTGTGAAAAGATGTGCAATGAACATGAAAAATCAATCCACAAAAAATCGATTTCGAAGCAGCAAAATATAGTTGCGCAACAAAATAGAAACATCCAGGAATTGAAAAACATTGTCCATCAAACAAAACAAGGAATGCAATTGATGCAAAGTGAACACCAGAAGGAGATCATTAATCTAAGCAAGCACCTATACAGCCTAACCTGTGCTGCTTCGGGATACCATAAAGTTCTTGAAGAAAACCGCAAGTTATATAATGTAGTGCAAGATCTGAAAGGAAATATTAGGGTATACTGTAGAGTCCGACCTTTCTTGGGTGGTCAACCAAGTCATTATAGCTCTGTCGGTAACGTGGAAGATGGAAGCATCTCAATCATAACACCTTCCAAATACGGTAAAGAGGGGAAGAAGACATTTAATTTCAATAGAGCATTTGGTCCTTCTGCAACCCAAGGAGAAGTTTTTGCCGACACACAGCCTCTTATTCGTTCTGTTTTGGACGGTTATAATGTCTGCATATTTGCCTATGGCCAGACGGGATCAGGAAAAACATTCACTATGTCTGGGCCAGATGAACTTAACGATGAGACCATAGGTGTCAACTATCGTGCACTAGGAGACCTTTTCTATCTCTCTGATCAAAGAAAAGATACAATTTCTTATGAAATCTCTGTTCAGATGCTTGAGATTTACAACGAGCAAGTTAGGGACCTACTTTTGTCCGATGGAGACATCCGCAATAGTTCCCTTAATGGCATCAACGTTCCAGATGCTAACCTTGTTCGGGTTTCATGCACTTCTGATGTCATAAGTTTGATGAACTTGGGACATAAGAATCGTGCTGTTGGTTCTACTGCCATGAATGATCGTAGTAGTCGGTCTCACAGTTGTCTTACAGTTCATGTTCAAGGAAAGAACTTGACCTCAGGAGGCACAATTCGTGGTTGCATGCATCTGGTTGATCTGGCAGGAAGTGAGAGGGCTGATAAAACGGAGGCTACAGGGGATAGACTCAAGGAGGCTCAACATATCAACAAGTCACTTTCTGCATTGGGAGATGTAATTTCTGCCCTTGCCCAAAAGAGTCCACATGTTCCCTACAGGAATAGCAAACTCACTCAGCTACTTCAAGATTCTCTTGGAGGGCAAGCAAAGACTCTCATGTTTGTTCATATAAGTCCGGAGCCCGAAGCTCTTGGAGAAACACTTAGCACACTCAAGTTCGCCGAACGAGTCGCCACTGTCGAACTCGGTTCAGCGCGAGTTAATAAAGACAATTCAGATGTGAAAGAGCTTAAAGAACAGATTGCTAGTTTGAAGGCAGCCTTAGCGAGAAAGGAAGGAGAAGCAGAACAGTTTAATAATTGCAATGAAACACCTAAGCATAAATCATATGCATCTTCTCCTCCTGTGCATCGGCCTTCCAGTGGTGGATCTCGTAGGCTATCAAAAGATGATTCTAGTAGCCTGGACGATCAGAAAAATGTTGCTTCAACGTTGAAAAGACAAAGCCTAGATCCTCATGACATGGATGCCAATTCACCTCAATGGACAAGTGTCACAAGTGAAAGAAAGGAGGATGATAAAGAATCAATTTCTGGAGATTGGGGTGATAAGATTTCCATGAACAGAAATGACAGCATAACTAGTGATGATAGTGTTGTGGGAGCGTGGGAAGTAGAAAGCAAACAATCTTCTCCGAGGTTAAGTCTCAATTTTCTCTCAGAGCCTTCTAAAATAGACAACTCCTCTAATAAAAAGGACAACCAAGACAATGAAGATTTACGGAGACCCAGTTTTGATATGACTACCACAGACGAATCAGATGAACACGAGATTGCTACTGTAACTAGTGATTCTTCTGAGTCAGACTTGCATTGGCCACCACAAATACCTAAACCAATCACCATTTCCAGTGGATTAGGCATTAAAGCAAAGAAAAAAACAAATCTCAGATCAATAAAGAACGCAGACAGCAGGAGTATGATCCCATCATTCATTCCTGCGCCCGTGCCTGTGCATGTGCCTGTGCCTGTTCCCGTCTCATCAAGGAAACAACAACCAGTTACTCAAGGAAGAAAGCCCCCAGGATCTTCTGATGTAAGGAGAAGATTTGGGAACAGTGCCAAGTGA 3111 0.4179 MATEPVLTFSLASVVEEVLQQHAGRLDANSASRKTEETSLRRYEAAGWLRKTVGVVRGKDLPAEPSEGDFRIGLRSGIILCSVLNKIQPGTVSKVFEKPCDSVIIPDGTTSAYQYQENIKNFLVAVEEMGLPTFEVSDLEQGGNSERVVDCVLELKSYAERKVGGSASGKYSGVANAKPPISAKRITRKNSEPFMKSMSPLPSGDRDGGYMSDPGQDRSERVRKLYLESLLSKVMEECEHHMQIRCKMYKTTREDTAPCETECSISEAASINETVKEKEDEHAVQEEHDLQDKHDVKDEHDIRDEHDVKVERDIQDEHREENKREESCEKMCNEHEKSIHKKSISKQQNIVAQQNRNIQELKNIVHQTKQGMQLMQSEHQKEIINLSKHLYSLTCAASGYHKVLEENRKLYNVVQDLKGNIRVYCRVRPFLGGQPSHYSSVGNVEDGSISIITPSKYGKEGKKTFNFNRAFGPSATQGEVFADTQPLIRSVLDGYNVCIFAYGQTGSGKTFTMSGPDELNDETIGVNYRALGDLFYLSDQRKDTISYEISVQMLEIYNEQVRDLLLSDGDIRNSSLNGINVPDANLVRVSCTSDVISLMNLGHKNRAVGSTAMNDRSSRSHSCLTVHVQGKNLTSGGTIRGCMHLVDLAGSERADKTEATGDRLKEAQHINKSLSALGDVISALAQKSPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPEALGETLSTLKFAERVATVELGSARVNKDNSDVKELKEQIASLKAALARKEGEAEQFNNCNETPKHKSYASSPPVHRPSSGGSRRLSKDDSSSLDDQKNVASTLKRQSLDPHDMDANSPQWTSVTSERKEDDKESISGDWGDKISMNRNDSITSDDSVVGAWEVESKQSSPRLSLNFLSEPSKIDNSSNKKDNQDNEDLRRPSFDMTTTDESDEHEIATVTSDSSESDLHWPPQIPKPITISSGLGIKAKKKTNLRSIKNADSRSMIPSFIPAPVPVHVPVPVPVSSRKQQPVTQGRKPPGSSDVRRRFGNSAK 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00028 1036 SMART kinesin_4 418 749 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4717g00028 1036 FunFam Kinesin-like protein KIN-14I isoform A 415 783 - -
Vium4717g00028 1036 SMART ch_5 41 158 IPR001715 GO:0005515
Vium4717g00028 1036 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 776 IPR027417 -
Vium4717g00028 1036 PANTHER KINESIN-LIKE PROTEIN KLP-3 46 908 IPR027640 GO:0003777|GO:0007018
Vium4717g00028 1036 MobiDBLite consensus disorder prediction 775 937 - -
Vium4717g00028 1036 MobiDBLite consensus disorder prediction 779 800 - -
Vium4717g00028 1036 CDD CH_AtKIN14-like 41 157 - -
Vium4717g00028 1036 MobiDBLite consensus disorder prediction 847 861 - -
Vium4717g00028 1036 ProSiteProfiles Calponin homology (CH) domain profile. 39 160 IPR001715 GO:0005515
Vium4717g00028 1036 Pfam Kinesin motor domain 426 740 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4717g00028 1036 Coils Coil 344 364 - -
Vium4717g00028 1036 Pfam Calponin homology (CH) domain 42 160 IPR001715 GO:0005515
Vium4717g00028 1036 Coils Coil 748 775 - -
Vium4717g00028 1036 MobiDBLite consensus disorder prediction 1004 1036 - -
Vium4717g00028 1036 MobiDBLite consensus disorder prediction 907 937 - -
Vium4717g00028 1036 MobiDBLite consensus disorder prediction 190 217 - -
Vium4717g00028 1036 PRINTS Kinesin heavy chain signature 691 712 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4717g00028 1036 PRINTS Kinesin heavy chain signature 494 515 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4717g00028 1036 PRINTS Kinesin heavy chain signature 642 660 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4717g00028 1036 PRINTS Kinesin heavy chain signature 611 628 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4717g00028 1036 MobiDBLite consensus disorder prediction 885 906 - -
Vium4717g00028 1036 MobiDBLite consensus disorder prediction 864 878 - -
Vium4717g00028 1036 SUPERFAMILY Calponin-homology domain, CH-domain 42 165 IPR036872 -
Vium4717g00028 1036 Gene3D Kinesin motor domain 415 783 IPR036961 -
Vium4717g00028 1036 ProSiteProfiles Kinesin motor domain profile. 420 741 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4717g00028 1036 CDD KISc_C_terminal 418 743 - -
Vium4717g00028 1036 MobiDBLite consensus disorder prediction 277 329 - -
Vium4717g00028 1036 Gene3D - 31 163 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4717g00028 Vium-Chr4717 235549 241758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00028 408 794 Calmodulin-binding Proteins AT5G65930 39.186 1.09e-72 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00028 K10406 - gmx:100799535 1447.57