Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00026 ATGCGATTCGTTTCGGTATTAGTAAGATTGGTAATGATGGATCTGAAGGAATGGTCTTCTCCAGAGCTCAACGAGAGCAAGAAATGCTGCTCCGATTGCAAAACCACCAAGACTCCTCTGTGGAGAGGAGGACCAGCTGGACCTAAGACTCTGTGCAACGCCTGCGGAATCAGGTACCGGAAGAGAGGGAGTTGTTCGAGGAAGAGAGAGGAGGTGGTGGTGTTGCACCGGACATCCTCTGTTGTGAAGAAACAGAGGTGGAAGATGTTGGGAGAAGAGGAACAGGCGGCTGTGTGTTTGATGGCCCTGTCCTGTGGTTTTTTTACCATTCCTTCACTTACCGCATTCCAGGTAACCTAA 360 0.5 MRFVSVLVRLVMMDLKEWSSPELNESKKCCSDCKTTKTPLWRGGPAGPKTLCNACGIRYRKRGSCSRKREEVVVLHRTSSVVKKQRWKMLGEEEQAAVCLMALSCGFFTIPSLTAFQVT 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00026 119 CDD ZnF_GATA 30 65 IPR000679 GO:0006355|GO:0043565
Vium4717g00026 119 ProSitePatterns GATA-type zinc finger domain. 30 55 IPR000679 GO:0006355|GO:0043565
Vium4717g00026 119 PANTHER OS01G0976800 PROTEIN 19 63 - -
Vium4717g00026 119 ProSiteProfiles GATA-type zinc finger domain profile. 24 63 IPR000679 GO:0006355|GO:0043565
Vium4717g00026 119 SMART GATA_3 24 75 IPR000679 GO:0006355|GO:0043565
Vium4717g00026 119 Gene3D - 24 91 IPR013088 GO:0006355|GO:0008270
Vium4717g00026 119 Pfam GATA zinc finger 30 64 IPR000679 GO:0006355|GO:0043565
Vium4717g00026 119 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 26 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4717g00026 Vium-Chr4717 223693 224487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00026 14 106 C2C2-Gata Transcription Factor Family AT5G49300 49.565 4.86e-28 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium4717g00026 GATA 4.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00026 - - vra:106757446 243.047