Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium4717g00025 | ATGTCGTATCGGCCGACAGCAAACTCCAGGACCGAGCTTCGTCGGAACCGTTACAAAGTCGCCGTGGACGCTGATGAAGGTCGGCGGCGGCGAGAGGATACCATGGTGGAGATTCGAAAGAACCGTAGGGAGGAGAGCTTGCAGAAGAAGAGACGTGAGGGTCTCCAATCTCAGCAGATTCCTGCGTCAGTTCATTCTACTGCAATAGAAAAGAAGTTGGAACAGCTACCAGCCATGGTTGCAGGTGTTTGGACTAATGACAATAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGATGCTTTCAATTGAACGTAGCCCACCCATTGAGGAGGTTATTCAAGCTGGTGTAGTTCCACGGTTTGTTGAGTTTTTAACGAGGGAAGATTTTCCAATGCTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAATACTAAAGTGGTAATTGATCATGGTGCTGTCCCTATTTTTGTAAAGCTCCTTGGTTCTCCCAGTGATGATGTCCGTGAACAGGCTGTTTGGGCATTAGGAAATGTTGCTGGAGATTCTCCTAGATGTCGAGATCTTGTTCTTAGTCATGGAGCTTTGCTTCCTCTATTGGCACAATTAAATGAGCATGCCAAACTTTCTATGCTAAGAAATGCTACTTGGACACTCTCAAATTTCTGCAGGGGAAAACCACAGCCTCCTTTTGATCAGGTTAAACCTGCTCTTCCAGCTCTTGCCAATCTTATCCATTCAAATGACGAAGAAGTCTTGACTGATGCCTGTTGGGCACTTTCTTATCTTTCTGATGGTACAAACGACAAAATTCAGGGTGTAATTGAAACTGGTGTTTGTAGCCGTCTTGTTGAGCTTCTGACGCACACTTCCCCCTCAGTGCTTATTCCTGCTCTTCGTACTGTTGGAAATATTGTCACTGGAGATGATTTGCAGACCCAGGTCATCATCAACCATCAAGCTCTTCCTCGTCTCTTGAATCTCTTGACCAATAATTATAAAAAAAGCATAAAGAAGGAAGCTTGCTGGACTATATCAAACATCACAGCTGGGAACAAACAACAGATTCAGGATGTAATTGAGGCTGGTCTAATTGCTCCTCTGGTCTATTTACTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCGTGGGCTATCTCAAATGCTACGTCAGGTGGATCTCATGAACAAATCAAGTTCCTTGTAAGTCAAGGATGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCTGATCCTAGGATTGTGACAGTTTGTTTGGAAGGTCTTGAAAACATCTTGAAGGTAGGAGAAGCTGAGAAAAACGTGAGCAATACTGATGGTGTGAATCTATATGGCCAAATGATTGATGATGCTGAGGGGTTAGAGAAAATTGAGAATCTCCAGAGTCATGATAACACTGAGATTTATGAAAAGGCAGTAAAGATTCTTGAGACATACTGGACGGAGGAAGATGATGAAACTGTGCCTCCAGGGGATGCTTCTCAGTCAGGCTTCAACTTTGGTGGCCACGAATTTCCTTCAGTGCCTTCTGGTGGATTCAACTTTATTTAG | 1599 | 0.4384 | MSYRPTANSRTELRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGLQSQQIPASVHSTAIEKKLEQLPAMVAGVWTNDNNMQFEATTQFRKMLSIERSPPIEEVIQAGVVPRFVEFLTREDFPMLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALANLIHSNDEEVLTDACWALSYLSDGTNDKIQGVIETGVCSRLVELLTHTSPSVLIPALRTVGNIVTGDDLQTQVIINHQALPRLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQDVIEAGLIAPLVYLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEAEKNVSNTDGVNLYGQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWTEEDDETVPPGDASQSGFNFGGHEFPSVPSGGFNFI | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium4717g00025 | 532 | MobiDBLite | consensus disorder prediction | 499 | 532 | - | - | |
| Vium4717g00025 | 532 | Pfam | Importin beta binding domain | 14 | 96 | IPR002652 | GO:0006606|GO:0061608 | |
| Vium4717g00025 | 532 | ProSiteProfiles | IBB domain profile. | 1 | 60 | IPR002652 | GO:0006606|GO:0061608 | |
| Vium4717g00025 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 328 | 371 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | PIRSF | Importin_alpha | 5 | 531 | IPR024931 | GO:0005737|GO:0006606|GO:0061608 | |
| Vium4717g00025 | 532 | FunFam | Importin subunit alpha | 74 | 497 | - | - | |
| Vium4717g00025 | 532 | MobiDBLite | consensus disorder prediction | 39 | 63 | - | - | |
| Vium4717g00025 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 371 | 399 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | PANTHER | IMPORTIN ALPHA | 14 | 501 | - | - | |
| Vium4717g00025 | 532 | Gene3D | - | 74 | 497 | IPR011989 | - | |
| Vium4717g00025 | 532 | SMART | arm_5 | 149 | 189 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | SMART | arm_5 | 360 | 400 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | SMART | arm_5 | 403 | 443 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | SMART | arm_5 | 317 | 358 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | SMART | arm_5 | 275 | 315 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | SMART | arm_5 | 106 | 147 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | SMART | arm_5 | 190 | 232 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | SMART | arm_5 | 234 | 273 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | FunFam | Importin subunit alpha | 13 | 52 | - | - | |
| Vium4717g00025 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 318 | 358 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 360 | 399 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 404 | 441 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 278 | 314 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 149 | 188 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 245 | 272 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 107 | 147 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 191 | 232 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | Pfam | Atypical Arm repeat | 458 | 503 | IPR032413 | - | |
| Vium4717g00025 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 160 | 202 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | SUPERFAMILY | ARM repeat | 13 | 501 | IPR016024 | - | |
| Vium4717g00025 | 532 | Gene3D | - | 12 | 52 | IPR036975 | GO:0006606 | |
| Vium4717g00025 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 117 | 160 | IPR000225 | GO:0005515 | |
| Vium4717g00025 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 244 | 286 | IPR000225 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium4717g00025 | Vium-Chr4717 | 205308 | 213407 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium4717g00025 | 132 | 392 | U-box Gene Family | AT3G46510 | 24.138 | 7.03e-10 | 59.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium4717g00025 | K15042 | - | gmx:100798125 | 991.104 |