Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00025 ATGTCGTATCGGCCGACAGCAAACTCCAGGACCGAGCTTCGTCGGAACCGTTACAAAGTCGCCGTGGACGCTGATGAAGGTCGGCGGCGGCGAGAGGATACCATGGTGGAGATTCGAAAGAACCGTAGGGAGGAGAGCTTGCAGAAGAAGAGACGTGAGGGTCTCCAATCTCAGCAGATTCCTGCGTCAGTTCATTCTACTGCAATAGAAAAGAAGTTGGAACAGCTACCAGCCATGGTTGCAGGTGTTTGGACTAATGACAATAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGATGCTTTCAATTGAACGTAGCCCACCCATTGAGGAGGTTATTCAAGCTGGTGTAGTTCCACGGTTTGTTGAGTTTTTAACGAGGGAAGATTTTCCAATGCTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAATACTAAAGTGGTAATTGATCATGGTGCTGTCCCTATTTTTGTAAAGCTCCTTGGTTCTCCCAGTGATGATGTCCGTGAACAGGCTGTTTGGGCATTAGGAAATGTTGCTGGAGATTCTCCTAGATGTCGAGATCTTGTTCTTAGTCATGGAGCTTTGCTTCCTCTATTGGCACAATTAAATGAGCATGCCAAACTTTCTATGCTAAGAAATGCTACTTGGACACTCTCAAATTTCTGCAGGGGAAAACCACAGCCTCCTTTTGATCAGGTTAAACCTGCTCTTCCAGCTCTTGCCAATCTTATCCATTCAAATGACGAAGAAGTCTTGACTGATGCCTGTTGGGCACTTTCTTATCTTTCTGATGGTACAAACGACAAAATTCAGGGTGTAATTGAAACTGGTGTTTGTAGCCGTCTTGTTGAGCTTCTGACGCACACTTCCCCCTCAGTGCTTATTCCTGCTCTTCGTACTGTTGGAAATATTGTCACTGGAGATGATTTGCAGACCCAGGTCATCATCAACCATCAAGCTCTTCCTCGTCTCTTGAATCTCTTGACCAATAATTATAAAAAAAGCATAAAGAAGGAAGCTTGCTGGACTATATCAAACATCACAGCTGGGAACAAACAACAGATTCAGGATGTAATTGAGGCTGGTCTAATTGCTCCTCTGGTCTATTTACTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCGTGGGCTATCTCAAATGCTACGTCAGGTGGATCTCATGAACAAATCAAGTTCCTTGTAAGTCAAGGATGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCTGATCCTAGGATTGTGACAGTTTGTTTGGAAGGTCTTGAAAACATCTTGAAGGTAGGAGAAGCTGAGAAAAACGTGAGCAATACTGATGGTGTGAATCTATATGGCCAAATGATTGATGATGCTGAGGGGTTAGAGAAAATTGAGAATCTCCAGAGTCATGATAACACTGAGATTTATGAAAAGGCAGTAAAGATTCTTGAGACATACTGGACGGAGGAAGATGATGAAACTGTGCCTCCAGGGGATGCTTCTCAGTCAGGCTTCAACTTTGGTGGCCACGAATTTCCTTCAGTGCCTTCTGGTGGATTCAACTTTATTTAG 1599 0.4384 MSYRPTANSRTELRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGLQSQQIPASVHSTAIEKKLEQLPAMVAGVWTNDNNMQFEATTQFRKMLSIERSPPIEEVIQAGVVPRFVEFLTREDFPMLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALANLIHSNDEEVLTDACWALSYLSDGTNDKIQGVIETGVCSRLVELLTHTSPSVLIPALRTVGNIVTGDDLQTQVIINHQALPRLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQDVIEAGLIAPLVYLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEAEKNVSNTDGVNLYGQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWTEEDDETVPPGDASQSGFNFGGHEFPSVPSGGFNFI 532
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00025 532 MobiDBLite consensus disorder prediction 499 532 - -
Vium4717g00025 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Vium4717g00025 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Vium4717g00025 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 371 IPR000225 GO:0005515
Vium4717g00025 532 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vium4717g00025 532 FunFam Importin subunit alpha 74 497 - -
Vium4717g00025 532 MobiDBLite consensus disorder prediction 39 63 - -
Vium4717g00025 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 399 IPR000225 GO:0005515
Vium4717g00025 532 PANTHER IMPORTIN ALPHA 14 501 - -
Vium4717g00025 532 Gene3D - 74 497 IPR011989 -
Vium4717g00025 532 SMART arm_5 149 189 IPR000225 GO:0005515
Vium4717g00025 532 SMART arm_5 360 400 IPR000225 GO:0005515
Vium4717g00025 532 SMART arm_5 403 443 IPR000225 GO:0005515
Vium4717g00025 532 SMART arm_5 317 358 IPR000225 GO:0005515
Vium4717g00025 532 SMART arm_5 275 315 IPR000225 GO:0005515
Vium4717g00025 532 SMART arm_5 106 147 IPR000225 GO:0005515
Vium4717g00025 532 SMART arm_5 190 232 IPR000225 GO:0005515
Vium4717g00025 532 SMART arm_5 234 273 IPR000225 GO:0005515
Vium4717g00025 532 FunFam Importin subunit alpha 13 52 - -
Vium4717g00025 532 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Vium4717g00025 532 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Vium4717g00025 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Vium4717g00025 532 Pfam Armadillo/beta-catenin-like repeat 278 314 IPR000225 GO:0005515
Vium4717g00025 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Vium4717g00025 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Vium4717g00025 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Vium4717g00025 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Vium4717g00025 532 Pfam Atypical Arm repeat 458 503 IPR032413 -
Vium4717g00025 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Vium4717g00025 532 SUPERFAMILY ARM repeat 13 501 IPR016024 -
Vium4717g00025 532 Gene3D - 12 52 IPR036975 GO:0006606
Vium4717g00025 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Vium4717g00025 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium4717g00025 Vium-Chr4717 205308 213407 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00025 132 392 U-box Gene Family AT3G46510 24.138 7.03e-10 59.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00025 K15042 - gmx:100798125 991.104