Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00024 ATGGATCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCCATGAGGTGGCACCCGGATAAGTGGACTCGGAATCCCGCAACCGCCGGAGAAGCCAAGCGGCGGTTTCAGCAAATCCAAGAAGCTTACTCAGTTCTTTCCGATCAATCTAAAAGATCAATGTACGATGCTGGCCTCTACGACCCTCTGGAGGAAGAAGACCAAGAGTTTTGTGATTTCATGCAAGAGATGATATCGATGATGAACAATGTAAAAGATGAGGGGGACAGTATGGAGGACCTACAGAGGATGTTCGTGGAGATGGTGGGGGGTGATGGGATTGACTTGAACCAGGATCAGATGGCTGGGAAGCGAGGACGTGTCAATGGATCAAGAGGCAATGCGGCCAAGCGCAGCAACTCTCGATCTTAG 477 0.5178 MDREGGSNGGSCYYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWTRNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQEFCDFMQEMISMMNNVKDEGDSMEDLQRMFVEMVGGDGIDLNQDQMAGKRGRVNGSRGNAAKRSNSRS 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00024 158 ProSiteProfiles dnaJ domain profile. 12 81 IPR001623 -
Vium4717g00024 158 SMART dnaj_3 11 73 IPR001623 -
Vium4717g00024 158 Gene3D DnaJ domain 2 104 IPR036869 -
Vium4717g00024 158 PRINTS DnaJ domain signature 14 32 IPR001623 -
Vium4717g00024 158 PRINTS DnaJ domain signature 53 73 IPR001623 -
Vium4717g00024 158 PRINTS DnaJ domain signature 32 47 IPR001623 -
Vium4717g00024 158 Pfam DnaJ domain 13 78 IPR001623 -
Vium4717g00024 158 SUPERFAMILY Chaperone J-domain 12 84 IPR036869 -
Vium4717g00024 158 MobiDBLite consensus disorder prediction 130 158 - -
Vium4717g00024 158 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Vium4717g00024 158 CDD DnaJ 12 70 IPR001623 -
Vium4717g00024 158 PANTHER PUTATIVE, EXPRESSED-RELATED 7 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4717g00024 Vium-Chr4717 201491 202694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00024 12 79 C2H2 Transcription Factor Family AT1G74250 43.478 3.53e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00024 - - gmx:548049 297.745