Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00022 ATGGCACCAAAAAGAACCTTTGACGAGGAGGATCATCACAATAACGACGACACCCATCTTCAAACTGTTGCTAAAAGAAGACGGGACGAGACCATTGCCGCTTTGGAACCTGTTCTTCGCAAATTGATGGAGGAGTTGATTCCACCTATGCTAGAGCGTCACGTGTCTCCGTGTTGTCGATTTTGCCATAACCATCAGGGTGGCAGTTCTGGAGGAAGAGCTTACCAATTGTGCTTCGTCAATGAATTGCCTAAAGTAATTTTCACCATGGCCAATCTCACAGCTGAGGACGGTGGTTCACTTGAAATTGAGCTGCGGGATGCTGCATCGCAGCAACGCGTTGACACAGAGGAATTTTCCAGCATGAAGGCTCAGATCTATGTGCTGGATGGTGCTTTTGAAAGTCAGGACTGGACTGCAGAGGAATTTGATGGCAACATTGTGAAACCAAGAGAGGGGAAGGCACCATTACTCAGAGGACACACGGTTACTAAAATTGAAAAAGGGGTTGGTTTTATCGATAAGAAGAGGCTTAAGATTACTGATAATTCTTTCACCACAAGAAACAAAACGTTTCGGTTGGGAGTTAAAATCGTGGGATCTAACTCCCATGGAGTAGGAATCAAGGAAGCCATAAGCGAACCCTTCAGGGTCAAAGATAAACGTGGAGAGTTGGCCAGGAAATCCGAGCGTCCAGCCTTGAACGATGAAGTATGGCGTCTGAGGAACATTGGAAAAGCGGGTGAGCTTCGCAAGCAGCTTTCAAGGAATAAAATAAAGACTGTGAAGGATCTTTTGCGGCGGGACACAATCGGTTTATTACGGGAGAAATTCGGCAAGATTAATACATGGGACAAAATCATTGAACATGCTAAAGAATGTGAACTAGATGAATCTGAGCGCTACTTGTACACGTATCGTGCCACGGAACCAGAGAAATCTGTTTCCCTTGTCTTTAATTGCATCTATGAGCTTGTGGAGGTCATTATTAACGGCCAACATCGTTCTCTGAAATCTCTGAATTCGGAGGAGGAGCGTTTTGTGGGAAGAATGAAGGTGGAAGCATACTCAAATCTGGAGGATCTGGAGCCAATTGCTGCCACACCAACGACACATGACATAGTGTCGAAGTTAGCAGGTACACAGGCGGTGTCATACAGTGCTCCATATCAAGGTCAATTGGAAACATCAACATCAATCGTAGATGATAGCTGGCCGGCGTTCTTCGACGAATTTGAAACTTACTTTACTCCTAACCCTGACCAGTGGGAGCAACCGAATTTTTTCCCCTTACTATGTGGTGACAATGGAGCATCATGTAGCCAAGACAGCCCTTCCTTTTTGCCCAACACTGCTGAGTATATGGCAAGCAAAGGGAAAGCCAAGACGGTTTGGCAGAAAGTCAGAAATGCTTTCAAACTCCTCATACATCCGCATAGGGCTTAA 1446 0.455 MAPKRTFDEEDHHNNDDTHLQTVAKRRRDETIAALEPVLRKLMEELIPPMLERHVSPCCRFCHNHQGGSSGGRAYQLCFVNELPKVIFTMANLTAEDGGSLEIELRDAASQQRVDTEEFSSMKAQIYVLDGAFESQDWTAEEFDGNIVKPREGKAPLLRGHTVTKIEKGVGFIDKKRLKITDNSFTTRNKTFRLGVKIVGSNSHGVGIKEAISEPFRVKDKRGELARKSERPALNDEVWRLRNIGKAGELRKQLSRNKIKTVKDLLRRDTIGLLREKFGKINTWDKIIEHAKECELDESERYLYTYRATEPEKSVSLVFNCIYELVEVIINGQHRSLKSLNSEEERFVGRMKVEAYSNLEDLEPIAATPTTHDIVSKLAGTQAVSYSAPYQGQLETSTSIVDDSWPAFFDEFETYFTPNPDQWEQPNFFPLLCGDNGASCSQDSPSFLPNTAEYMASKGKAKTVWQKVRNAFKLLIHPHRA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00022 481 Pfam Calmodulin binding protein-like N-terminal domain 75 221 IPR046831 -
Vium4717g00022 481 MobiDBLite consensus disorder prediction 1 20 - -
Vium4717g00022 481 Pfam Calmodulin binding protein central domain 233 294 IPR046830 -
Vium4717g00022 481 Pfam Calmodulin binding protein C-terminal domain 303 364 IPR046829 -
Vium4717g00022 481 PANTHER OS02G0177800 PROTEIN 25 442 IPR012416 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4717g00022 Vium-Chr4717 182461 185301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00022 18 365 Calmodulin-binding Proteins AT5G26920 35.833 1.75e-59 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00022 - - vra:106757360 806.979