LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4717g00021	ATGGTATCAAAAAGGAAATCTTTTGAGAGGCAACGCAGTGGCAAAGTTCCAATTCAGGACCATAAACGGAGCTATGTTGATACCAAACAAGCGCCAATCAGTGCCCTGAGAAATGTGATCAACGCACTGTGGCTGAATGACCACTCATCCTATTTAGAAACTTTTGTGCGAAGAGTGGTAAGGGAGGAGTTAGAAAAAAAAATCCAGGACCAGGTTCATCTATTTTCAAGAAAAAAGGTTAATGAGGCTGGAATATCCGGAGCCAAACGCTTTAAGTTGTGCTTTCTTAATAAGTTACCTAAGACAATCTATACTCGGTCTAATATAAAAGCAGAAGACGAATCAGTTCTTCAAATTGCTTTATTTGATGTTAGAACGAAGTCTGTAGTAGAGGAGGGTCCCCTTTCCTCGCTAAAGATAGAGATCTGTGTTCTGAATGGTGAGTTCGGATCTGATGGCAGTGAGGAGTGGACAGAAGAGGAGTTCAAGTCCAATATCTCACGTGAAAGAGAAGGTAGAGAGCCACTTTTGATTGGAGAGAGGTTTATTACTCTTAAAAATGGAGCTGCTTGTATCACTAAAATTGCCATATCTGATAACTCGAGATGGCAAAGAAGCAGAAGGTTCAGGATTGGAGTTAAATGTGTGCCACCAACTTCCATTGGAGAAAAGATTCAGGAGGGTAGAAGTGAGCCTGTTATTGTTAAAGATAACAGGGGAGAGTGCTACAAGAAACACTTCCCTCCATTCTTGGATGACGAATTATGGCGTTTGAAGAAAATTGCCAAGGAAGGAAGAATCCAGAAGCAATTTTCTTTACATGGAATTCACACCGTGAAGGATCTCTTGCGGCAGTACATAACCAACGAACAATCACTGTATAAAATGCTTGACCTTCCAAAGAAGTCATGGTTAGCGATCACTGACCATGCCAATACCTGTGTGATCGATGATTACAAGCTTTACGGCTATCAGTCACAAGAACCGGAAATAGGCCTGCTATTCAATTCCATCTACATCCTCGTGGGAGTGACATTTGATTGGCAAAATTATTATTCACCGGATATTCTCACTCCCCATGATAAGCATTGGGTGGAAATAGTGAAGCAGCAAGCTTACAAAAATGTCAACAATTTGAAAATGATTGATGAAACTAAATTGAACAGTTTAAACCTAGACGCATGTCTAAAAAAAGCAAGACAGTCCGACACTCCAGATCAATGTCTGCTACACATGGATATGTCAACTGCACAAGGTCAAGCAGAAACATTCCCAGGTTGTAGTCAACCATCTATCTCTACTTCATATACTGATGAAGGAATGCATGACGGCCAAATTTATGCCGATCCACAGCCAGGCACGAGAGAAATGCCGCTTAACGGTTATGTGTTGGATGAATTTTCCTCTGAAATGTACAATGACGAGGATGGTTGTCACTTTGACGGATCGTGTTTACCATTCCCTGAAGGTGGATATTCGATGGAGAATGAAAGGTCAGATGTTGAATTCATATATGGTTGTCCTCCTTGGGCAACATGGGAACCAAAAAGTGGTATTTTCTTTGGTTCTTGTGATGGAGAAGAATGTAGCCGTTATTCTACTTTCACAAATTCTGCTGTGGACATATCAAGTAGTGGCAAATCCAAAGCAGCGTGGTGTAAGATTGGTTTTGTTCTGAAATGGGTCATATCAGTAAAAAGGCACGCAACTGCCAAAAAGAATGCTCAGCTGTTTTACCATAACTAA	1746	0.4095	MVSKRKSFERQRSGKVPIQDHKRSYVDTKQAPISALRNVINALWLNDHSSYLETFVRRVVREELEKKIQDQVHLFSRKKVNEAGISGAKRFKLCFLNKLPKTIYTRSNIKAEDESVLQIALFDVRTKSVVEEGPLSSLKIEICVLNGEFGSDGSEEWTEEEFKSNISREREGREPLLIGERFITLKNGAACITKIAISDNSRWQRSRRFRIGVKCVPPTSIGEKIQEGRSEPVIVKDNRGECYKKHFPPFLDDELWRLKKIAKEGRIQKQFSLHGIHTVKDLLRQYITNEQSLYKMLDLPKKSWLAITDHANTCVIDDYKLYGYQSQEPEIGLLFNSIYILVGVTFDWQNYYSPDILTPHDKHWVEIVKQQAYKNVNNLKMIDETKLNSLNLDACLKKARQSDTPDQCLLHMDMSTAQGQAETFPGCSQPSISTSYTDEGMHDGQIYADPQPGTREMPLNGYVLDEFSSEMYNDEDGCHFDGSCLPFPEGGYSMENERSDVEFIYGCPPWATWEPKSGIFFGSCDGEECSRYSTFTNSAVDISSSGKSKAAWCKIGFVLKWVISVKRHATAKKNAQLFYHN	581

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4717g00021	581	MobiDBLite	consensus disorder prediction	1	21	-	-
	Vium4717g00021	581	Pfam	Calmodulin binding protein C-terminal domain	320	380	IPR046829	-
	Vium4717g00021	581	Pfam	Calmodulin binding protein-like N-terminal domain	91	238	IPR046831	-
	Vium4717g00021	581	PANTHER	OS02G0177800 PROTEIN	44	445	IPR012416	GO:0005516
	Vium4717g00021	581	Pfam	Calmodulin binding protein central domain	251	314	IPR046830	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4717g00021	Vium-Chr4717	178027	181323	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium4717g00021	52	384	Calmodulin-binding Proteins	AT5G26920	40.176	2.30e-74	241

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4717g00021	-		-	pvu:PHAVU_001G226000g	941.799