Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00020 ATGGATATGGAGAAAAGGCGTTCCAAGGGAAGCTTCCTAAGCTTGTTTGATTGGAACTCCAAATCTCGAAAGAAGCTGGTTTGGAGCGATCCGGAGATTTCAAAGCAAGGGAAGGGAAATGTGGAGAACTTACACAAGTCGCAGCTCACTAGGATAAAGGTGGATGAAATTGGAGCAAGTCCAAGTAACATTCAAAGTTGTGATTTTGACAGTACCCTCTCAATTTGTAGTGATGAAGGATGTGGGAGTAAAGGTCCTGGGTTAGTAGCGAGACTCATGGGTTTGGATTCGTTGCCAGCTTCGGCTGTCACTGAGCCCTCCTGCACCTCACTTTACGGCTCTACATCTCATGGAGTCTCTGACTATAATGAAGGTGCTCTTCGTTCAGTGGATGAGTTTTTCCCTGCAGACTACATAAATACACTGCTTAAGCTGGAAAAGTCTCAATTGGGTGCCATAGAGTCAAGGGCTAGAAAAGTGGAAAACCTTCCAATAAAGAGATTTCAAACTGAAATGTTACCTCCAAAGTCAGCTAAGTCCATTCCAGTTACTCATAATAAACTGCTGTCTCCTATCAAGAGTCCTGGTTTTCTGCCACCAAAAAATGCTGCTCATGTAATGGAGGCAGCGGCTAAGATAATTGAGGCGAGCCCTCAGCCGTATTTGAGGAATAGAATATCTACTGGGTCTTCTTCTGTTCCCTTGAGAATTCTCAATTTGAAAGAGAGATTGGAAGCTGCACAATATACATCAGTGACTGGAAAACCTGCGAATATGAGCAAAACCTATCCTGCAAATGGCAAGCTTAGCGAGAGGAGTAGTAATTTATCCAAATGCACTTCAGCATTCAAGGGTTCAAGAGGTTCAGAAAAAAATAGTCCTTGCCATTTAGCCAGTAAAGGAAAACCAGTTTCACTTGCAATCCACGCCAAAAACAACGCTCATAGTAGAGATACATTGATTTCAAATGGTGACATGAAATGCATGAGAGAGAAAGAGAAGAATGGAATGAAGTCAAATCAGCACTTAAGGAGCCAGAAACCAAGTACGCAAAAAGCCATGCAGCAGAGACCTTGCTCAAGTCGGAATGGCAATGTGCTTGGGCAGAATAATCAAAAACAAAATAGCATGACTGTCAAGGGTAAATCAACTTCAAAATTAGATTCCAATAAGCCAACAACACGAGCTTCACCTTCAGAAACTTTTGGAATAAGGAAGACAACAAACAATGGTGCTACAAATGCCAATGTTCATCCTAGAAGGTCAAGCATCAGGGCAACTGACATCCAAAAGGAGTTTCCACGATCCAAATCAGTAAGTACTTCGAGAAAGACAAAATATATCAGCAGTGATGTTCATGAGGCTGGAGGTCCTGATAATGCAGTAAATAATTTTGGAAGTAAGTCCATCAAATGCAATTTTACGACTGATGGAAGTTTTGATCAGGATGCATTTAACATGAAAGAAAGCAAGGATGTTATTTCATTTACATTCACATCTCCCTTGAGGAGAAGTATGCCTGAGTCATCTTCCTCCACCGAGCAAGTCAACGGAACTAGAAATAGAATTGATGTAAACTCTCTTGCGCATAGTGATAATCTTCATCCCAAAAAACTGTCATTATCTCCACAAGGAAAACATATGATAGACAGTGATGCTCTAAGTATCCTGTTGGACAAAAAGTTACAAGAATTGACATCCAGAATTAACTTACCTCAATGTACCTTGGCCGCAGAGGGAAGTTCTTCTGGTTTGGGATCTAATGTGCAAGACAACTTTCCCAGTGCAGCAAGCACCATGCCTAAGGAACAAGACAGAAGCCTTTTCTCTGACCTGTTTAGTGATAAACTGGACAGCATTCTTGACTCTCGTCCAAGTGATGATCCCGTGCTTAGCATGAATCAGCAACTTCAGACTTCTGAAGTAAATCAAGATCCTAGCTGTAGCAGCAATAGTGAAAGTGGAAATGATATAGTTTGTTGTCGTTCAACTTCTGTTGCAGGGTCTGAAACTCTTGTCAGCGAAAGTTACTTGGATAGTGAAGACAGCGCTTACGCCAGCACAATCTATTCTTCAATGCAAGACGAAGAAGCATCTAGTTTTTCCCAGATAAGCGAATCTGTATCACTTGAAAGTGAGGTGAAGGGACCAGAGCAAAGCCCTTCCATATCGGGGGATGGAAATATGACCGTCAAACAAATGAATGGGATATCTAGTTCAGTTGATTTTAAGAGATCAAGTAACACAGAACTTGAATATGTACAGGATATTCTTGGTAATGCAAAGTTTATGGCAGAAGAATTTGCCATGGGTCAAACTAGTGCAGTCATTATGCCAAATTTATTTGAACTGTTGGAGAATCAGAATAGTAGAACAGAAAACTACGGAGAAGAGTACTCTAAACTTGAAAGGAAGGCTATATTTGATTGTGTGAGCGAGTTCCTGGAGTTAAGATGTAAGCAAGCTTTCATTGGAACGTGCAAAGTGTGGCCTGGATGGATGATGGCAGTTCAGAGGAAGAACTGGATGGCAGAGGAACTGTACAAGGAGATGCTGAATTTTAGAAGCATGGAAGAGGTAATGGTGGATGAGCTTGTCACAAAGGACATGAGCTCCGGATGTGGGAAATGGCTTGACTTTGATGTTGAAGCATTTGAAGAGGGTTTAGAGGTTGAAGGGGACATACTAGCTTATTTGATTAATGAATTAGTTTCAGATTTGTTACCGGTCTAA 2733 0.4135 MDMEKRRSKGSFLSLFDWNSKSRKKLVWSDPEISKQGKGNVENLHKSQLTRIKVDEIGASPSNIQSCDFDSTLSICSDEGCGSKGPGLVARLMGLDSLPASAVTEPSCTSLYGSTSHGVSDYNEGALRSVDEFFPADYINTLLKLEKSQLGAIESRARKVENLPIKRFQTEMLPPKSAKSIPVTHNKLLSPIKSPGFLPPKNAAHVMEAAAKIIEASPQPYLRNRISTGSSSVPLRILNLKERLEAAQYTSVTGKPANMSKTYPANGKLSERSSNLSKCTSAFKGSRGSEKNSPCHLASKGKPVSLAIHAKNNAHSRDTLISNGDMKCMREKEKNGMKSNQHLRSQKPSTQKAMQQRPCSSRNGNVLGQNNQKQNSMTVKGKSTSKLDSNKPTTRASPSETFGIRKTTNNGATNANVHPRRSSIRATDIQKEFPRSKSVSTSRKTKYISSDVHEAGGPDNAVNNFGSKSIKCNFTTDGSFDQDAFNMKESKDVISFTFTSPLRRSMPESSSSTEQVNGTRNRIDVNSLAHSDNLHPKKLSLSPQGKHMIDSDALSILLDKKLQELTSRINLPQCTLAAEGSSSGLGSNVQDNFPSAASTMPKEQDRSLFSDLFSDKLDSILDSRPSDDPVLSMNQQLQTSEVNQDPSCSSNSESGNDIVCCRSTSVAGSETLVSESYLDSEDSAYASTIYSSMQDEEASSFSQISESVSLESEVKGPEQSPSISGDGNMTVKQMNGISSSVDFKRSSNTELEYVQDILGNAKFMAEEFAMGQTSAVIMPNLFELLENQNSRTENYGEEYSKLERKAIFDCVSEFLELRCKQAFIGTCKVWPGWMMAVQRKNWMAEELYKEMLNFRSMEEVMVDELVTKDMSSGCGKWLDFDVEAFEEGLEVEGDILAYLINELVSDLLPV 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00020 910 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 2 906 - -
Vium4717g00020 910 MobiDBLite consensus disorder prediction 709 729 - -
Vium4717g00020 910 MobiDBLite consensus disorder prediction 258 299 - -
Vium4717g00020 910 Coils Coil 785 805 - -
Vium4717g00020 910 MobiDBLite consensus disorder prediction 258 288 - -
Vium4717g00020 910 MobiDBLite consensus disorder prediction 334 444 - -
Vium4717g00020 910 Pfam DUF761-associated sequence motif 77 102 IPR032795 -
Vium4717g00020 910 MobiDBLite consensus disorder prediction 580 604 - -
Vium4717g00020 910 MobiDBLite consensus disorder prediction 341 423 - -
Vium4717g00020 910 Pfam Domain of unknown function (DUF4378) 750 902 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4717g00020 Vium-Chr4717 161267 165794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00020 3 908 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 32.009 1.06e-105 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00020 - - gmx:100804688 1417.14