Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4717g00011 ATGGTTTGCGAGGAAGAGTTGCTGATTGAAAAAGTCTGCGGGCTGTATGAACAAATCTCGAGCCTCGAGAGTCTGAAACCTTGCAAAAATGTCGACATGCTTTTCACCCAACTAGTCCTCACATGCATACCCCCTAGCCCAATAGATGTCACAAACCTAAACAAAAACGTGCAAGAGATTAGATCTCACCTTATAAAACTCTGTGGTGAAGCCGAAGGCCATTTAGAGACCCACTACTCAACCCTCCTAGGCTCATACGACAACCCTCTTCAAAACCTTCATATTTTTCCTTATTATTCAAACTACCTCAAACTCGGTCTCCTTGAGTTCACTATCCTCACCCAACACTGCACCCATGTCCCCAGCAAAATCGCCTTCGTGGGTTCTGGACCCCTCCCTCTCACCTCGATTGTTTTGGCATCAAACCACTTACCTTCCACCACATTTCACAACTATGACATGGACCCTTTAGCCAATTCCAACGCTATGCGCTTGGTTTCCTCTCACCCTGACTTGTCCAACCGCATGGTTTTTCACACCACTGACATATTGGATGTCTCCAACGCTTTGAAGGAGTACGAGGTTGTTTACTTGGCAGCCCTTGTGGGCATGGACAAGGAGAGCAAAAACCGCATCATCGATCACTTGGACAAGCACATGAACCCTGGAGCACTTCTCATGCTAAGGAGCGCTCATGGGGCAAGGGCTTTTCTCTACCCTGTCATTGAGCCTTGCGATCTTCGAGGCTTTGAGGTCCTCACCGTCTTCCACCCCACCGATGAGGTCATCAACTCGGTTGTCATCGCACGTAAATATCCTGTCCCTATGCACTCACTGGATCAAGGCCTTGCTTCCAAGATCCTTCCCAACAAATGTTCCGAGATTCAAGCCTTCAACCCCCTCAACCATGGGAACATGATCGAGGAATTTGCCATTGAGGAACAGCTCTAG 951 0.4826 MVCEEELLIEKVCGLYEQISSLESLKPCKNVDMLFTQLVLTCIPPSPIDVTNLNKNVQEIRSHLIKLCGEAEGHLETHYSTLLGSYDNPLQNLHIFPYYSNYLKLGLLEFTILTQHCTHVPSKIAFVGSGPLPLTSIVLASNHLPSTTFHNYDMDPLANSNAMRLVSSHPDLSNRMVFHTTDILDVSNALKEYEVVYLAALVGMDKESKNRIIDHLDKHMNPGALLMLRSAHGARAFLYPVIEPCDLRGFEVLTVFHPTDEVINSVVIARKYPVPMHSLDQGLASKILPNKCSEIQAFNPLNHGNMIEEFAIEEQL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4717g00011 316 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Vium4717g00011 316 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 73 232 IPR029063 -
Vium4717g00011 316 Gene3D Vaccinia Virus protein VP39 7 273 IPR029063 -
Vium4717g00011 316 PANTHER NICOTIANAMINE SYNTHASE 3 4 312 IPR004298 GO:0030410|GO:0030418
Vium4717g00011 316 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4717g00011 Vium-Chr4717 110606 111817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4717g00011 1 313 Nicotianamine Synthase Gene Family AT5G04950 60.625 6.49e-137 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4717g00011 K05953 - gmx:100794250 568.926